View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1741_low_10 (Length: 363)
Name: NF1741_low_10
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1741_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 285
Target Start/End: Original strand, 5035071 - 5035344
Alignment:
| Q |
12 |
ttattcttgtggattaggatattgtttctagcaaggcatcaagtgtagatttagaagatgagaattgtgaaggagtggaaggagaacaagaatgtttgac |
111 |
Q |
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| T |
5035071 |
ttattcttgtggattaggatattgtttctagcaaggcatcaagtgtagatttagaagatgagaattgtgaaggagtggaaggagaacaagaatgtttgac |
5035170 |
T |
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| Q |
112 |
aagaaggactctagctgcacatctcgattatatctacactcagcataaacccaaaaattaatgtctttggaatggaagcgacataataatgcaataaagc |
211 |
Q |
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| T |
5035171 |
aagaaggactctagctgcacatctcgattatatctacactcagcataaacccaaaaattaatgtctttggaatggaagcaacataataatgcaataaagc |
5035270 |
T |
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| Q |
212 |
aatatatgatcaatatataaatttttgtttcatgtataaaaaatatgcttaattttcttgagtttttgttgaat |
285 |
Q |
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| T |
5035271 |
aatatatgatcaatatataaatttttgtttcatgtataaaaaatatgcttaattttgttgagtttttgttgaat |
5035344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 4970657 - 4970743
Alignment:
| Q |
65 |
gaagatgagaattgtgaaggagtggaaggagaacaagaatgtttgacaagaaggactctagctgcacatctcgattatatctacact |
151 |
Q |
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| T |
4970657 |
gaagatgagagttgtgaaggattggaaggagaacaggaatgtttgacaagaaggactctagctgcacatctcgattatatctacact |
4970743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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