View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1741_low_11 (Length: 346)

Name: NF1741_low_11
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1741_low_11
NF1741_low_11
[»] chr1 (2 HSPs)
chr1 (19-289)||(14741829-14742099)
chr1 (208-289)||(50427821-50427902)
[»] chr5 (2 HSPs)
chr5 (208-288)||(9923678-9923758)
chr5 (208-288)||(1970069-1970149)
[»] chr4 (3 HSPs)
chr4 (208-288)||(23424762-23424842)
chr4 (208-289)||(39655607-39655688)
chr4 (222-288)||(39429640-39429706)
[»] chr3 (1 HSPs)
chr3 (208-288)||(43768438-43768518)
[»] chr2 (1 HSPs)
chr2 (208-288)||(20991696-20991776)
[»] chr8 (2 HSPs)
chr8 (222-285)||(42345812-42345875)
chr8 (242-289)||(7054495-7054542)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 14741829 - 14742099
Alignment:
Q  19 caagtggcataggaacagcattcaaataaggttgtgcttgaataacaaacgtaagaccaggtcccattctttgtttcatctcagaaaactccaaatcttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14741829 caagtggcataggaacagcattcaaataaggttgtgcttgaataacaaacgtaagaccaggtcccattctttgtttcatttcagaaaactccaaatcttc 14741928  T
Q  119 aagtaactcagcagaagcaatctcaaaagccatagatttcatactctcacgtatccaacttactacactttttccaacatctttccaaccaatagggtca 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14741929 aagtaactcagcagaagcaatctcaaatgccatagatttcatactctcacgtatccaacttactacactttttccaacatctttccaaccaatagggtca 14742028  T
Q  219 cctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcatc 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14742029 cctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcatc 14742099  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 50427902 - 50427821
Alignment:
Q  208 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcatc 289  Q
    ||||||||||||| ||||||||||| || |||| |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  50427902 caatagggtcaccaatattctcatggacatgaacattcttgttcatattcccaaagggtagttgaatttctattgttgcatc 50427821  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 9923678 - 9923758
Alignment:
Q  208 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcat 288  Q
    ||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9923678 caatagggtcaccaatattctcatggacatgaacattcttgttcatattctcaaagggtagttgaatttctattgctgcat 9923758  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 1970069 - 1970149
Alignment:
Q  208 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcat 288  Q
    ||||||||||||| ||||||| ||| || |||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  1970069 caatagggtcaccaatattcttatggacatgaacattcttgttcatattctcaaaggatagttgaatttctattgctgcat 1970149  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 23424762 - 23424842
Alignment:
Q  208 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcat 288  Q
    ||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23424762 caatagggtcaccaatattctcatggacatgaacattcttgttcatattctcaaagggtagttgaatttctattgctgcat 23424842  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 289
Target Start/End: Original strand, 39655607 - 39655688
Alignment:
Q  208 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcatc 289  Q
    ||||||||||||| ||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  39655607 caatagggtcaccaatattctcatggacatgaacattcttattcatattctcaaagggtagttgaatttctattgctgcatc 39655688  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 39429706 - 39429640
Alignment:
Q  222 atattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcat 288  Q
    ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39429706 atattctcatggacatgaacattcttgttcatattctcaaagggtagttgaatttctattgctgcat 39429640  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 43768518 - 43768438
Alignment:
Q  208 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcat 288  Q
    ||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43768518 caatagggtcaccaatattctcatggacatgaacattcttgttcatattctcaaagggtagttgaatttctattgctgcat 43768438  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 20991776 - 20991696
Alignment:
Q  208 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcat 288  Q
    ||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20991776 caatagggtcaccaatattctcatggacatgaacattcttgttcatattctcaaagggtagttgaatttctattgctgcat 20991696  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 42345875 - 42345812
Alignment:
Q  222 atattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctg 285  Q
    ||||||||||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  42345875 atattctcatggacatgaacattcttgttcatattctcaaaggatagttgaatttctattgctg 42345812  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 7054542 - 7054495
Alignment:
Q  242 attcttgttcatattctcaaagggtagttgaatttctattgctgcatc 289  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7054542 attcttgttcatattcttaaagggtagttgaatttctattgctgcatc 7054495  T

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