View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1741_low_12 (Length: 314)
Name: NF1741_low_12
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1741_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 11250821 - 11250529
Alignment:
| Q |
1 |
gatttttcattaatcaagttattctttgcatgttccatacttttggacatggtaccacactacaggatccatttaaaacttttaccacaagatccatatc |
100 |
Q |
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| T |
11250821 |
gatttttcattaatcaagttattctttgcatgttccatacttttggacatggtaccacactacaggaaccatttaaaacttttaccacaagatccatatc |
11250722 |
T |
|
| Q |
101 |
catatcnnnnnnnnnnnnnnatgaaaaactttttacataatattacttgtcttttatgttaaggaatctaccnnnnnnnnnataatttttccgtttatca |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
11250721 |
catatcttttttctttttttatgaaaaactttttacataatattacttgtcttttatgttaaggaatctacc--tttttttataatttttccgcttatca |
11250624 |
T |
|
| Q |
201 |
attcaaaagatgaagcttttgggtgcacagtcattcaac-tttaccaagccaaaacatgaattaaagttatagaacatttctaaaaccacccagt |
294 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11250623 |
attcaaaagatgaagcttttggttgcacagtcattcaacttttaccaagccaaaacatgaattaaagttatagaacatttctaaaaccacccagt |
11250529 |
T |
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