View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1741_low_15 (Length: 277)
Name: NF1741_low_15
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1741_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 4646405 - 4646666
Alignment:
| Q |
1 |
ttgatgccaagagacaacaatttattgtacaatttttcagattcaggaagtgctggggctgttccaagatcaacccattgattaaataatgtatcattgt |
100 |
Q |
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| T |
4646405 |
ttgataccaagagacaacaatttattgtacaattttttagattcaggaagtgctggtgctgttccaagatcaacccattgattaaataatgtatcattgt |
4646504 |
T |
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| Q |
101 |
atggttccaccctatcaattcattatatatatgtgttaaatagcatatatatacaaaaagtaaaacaaaatgcaaagttagagtatgaaaactaaagata |
200 |
Q |
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| T |
4646505 |
atggttccaccctatcaattcattatatatatgtgttaaatagcatatatatacaaaaagtaaaacaaaatgcaaagttagagtatgaaaactaaagata |
4646604 |
T |
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| Q |
201 |
aagatgatcgatcatacccaaatccgtgtttagcataatatggaagatttgatagtgaagtt |
262 |
Q |
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| T |
4646605 |
aagatgatcgatcatacccaaatccgtgtttagcataatatggaagatttgatagtgaagtt |
4646666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 23699227 - 23699176
Alignment:
| Q |
211 |
atcatacccaaatccgtgtttagcataatatggaagatttgatagtgaagtt |
262 |
Q |
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| T |
23699227 |
atcatacccaaatccgtgtttagcataatatggaagatttgatagggaagtt |
23699176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 41872649 - 41872765
Alignment:
| Q |
1 |
ttgatgccaagagacaacaatttattgtacaatttttcagattcaggaagtgctggggctgttccaagatcaacccattgattaaataatgtatcattgt |
100 |
Q |
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| T |
41872649 |
ttgataccaagagacaatagtttattgtaaagtttttgagattctggcagtgctggtgctgtgccaaggtctgcccattcattaaacgacgtcgcattga |
41872748 |
T |
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| Q |
101 |
atggttccaccctatca |
117 |
Q |
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| T |
41872749 |
atggttccaccctatca |
41872765 |
T |
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