View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1741_low_16 (Length: 269)
Name: NF1741_low_16
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1741_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 13554853 - 13555103
Alignment:
| Q |
1 |
ctcattatgtaaaattcatttgcacattgactaacagcttgatcactgggaaattgttttgccacttttaaaagataagcttgagcctgtaacccctggt |
100 |
Q |
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| T |
13554853 |
ctcattatgtaaaattcatttgcacattgactaacagcttcatcactgggaaattgttttgccacttttaaaagataagcttgagcctgtaacccttggt |
13554952 |
T |
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| Q |
101 |
taaatgcaaaaaccacgatagacttggagagatcatgataatttgtggctgaggtgatttttgagtcagtttttaaaagattcaagcaagcattggcatc |
200 |
Q |
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| T |
13554953 |
taaatgcaaaaaccacgatagacttggagaggtcatgataatttgtggctgaggtgatttttgagtcagtttttaaaagattcaagcaagcattggcatc |
13555052 |
T |
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| Q |
201 |
ttgcctggcctcattgcatacagtttcgtacaagctgacgcatagtgctgg |
251 |
Q |
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| T |
13555053 |
ttgcctcgcctcattgcatacagtttcatacaagctgacgcatagtgctgg |
13555103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 13558987 - 13559231
Alignment:
| Q |
8 |
tgtaaaattcatttgcacattgactaacagcttgatcactgggaaattgttttgccacttttaaaagataagcttgagcctgtaacccctggttaaatgc |
107 |
Q |
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| T |
13558987 |
tgtaaaatacatttgcacattgaccaatagcttgattattgggaaattgttttgccacttttaaaagataagcttgatcctctagccccttgttaaatgc |
13559086 |
T |
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| Q |
108 |
aaaaaccacgatagacttggagagatcatgataatttgtggctgaggtgatttttgagtcagtttttaaaagattcaagcaagcattggcatcttgcctg |
207 |
Q |
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| T |
13559087 |
aaaactcaagatagatttggagaggtcatgataatttgtggctgaggtgatttttgggtcagtttttaaaagattcaagcaagcattggcatcttgcctg |
13559186 |
T |
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| Q |
208 |
gcctcattgcatacagtttcgtacaagctgacgcatagtgctggt |
252 |
Q |
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| T |
13559187 |
gcctcactgcatacagtttcatacaaactgacacagtgtgctggt |
13559231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 14173071 - 14173132
Alignment:
| Q |
127 |
gagagatcatgataatttgtggctgaggtgatttttgagtcagtttttaaaagattcaagca |
188 |
Q |
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| T |
14173071 |
gagaggtcatggtaatttgtggctgaggtgatttttgggtcagttttcaaaatattcaagca |
14173132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 14177607 - 14177668
Alignment:
| Q |
127 |
gagagatcatgataatttgtggctgaggtgatttttgagtcagtttttaaaagattcaagca |
188 |
Q |
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| T |
14177607 |
gagaggtcatggtaatttgtggctgaggtgatttttgggtcagttttcaaaatattcaagca |
14177668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 14166239 - 14166301
Alignment:
| Q |
126 |
ggagagatcatgataatttgtggctgaggtgatttttgagtcagtttttaaaagattcaagca |
188 |
Q |
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| T |
14166239 |
ggagaggtcatggtaattcgtcgctgaggtgatttttgggtcagttttcaaaatattcaagca |
14166301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 13505964 - 13505912
Alignment:
| Q |
133 |
tcatgataatttgtggctgaggtgatttttgagtcagtttttaaaagattcaa |
185 |
Q |
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| T |
13505964 |
tcatgataatttgtggctaaggcgatatttgggtcagttttcaaaagattcaa |
13505912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 13528614 - 13528555
Alignment:
| Q |
126 |
ggagagatcatgataatttgtggctgaggtgatttttgagtcagtttttaaaagattcaa |
185 |
Q |
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| T |
13528614 |
ggagaggtcatgataatttgtggctaaggggatatttgggtcagttttcataagattcaa |
13528555 |
T |
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