View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1741_low_19 (Length: 246)
Name: NF1741_low_19
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1741_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 36404289 - 36404526
Alignment:
| Q |
1 |
aaaacaaaaactatttcaaagaggctctatatgttctgaaaacaatgagatggaataaatgatgtagagtttnnnnnnngatgtgtaaaatgaatttgga |
100 |
Q |
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| T |
36404289 |
aaaacaaaaactatttcaaagaggctctatatgttctgaaaacaatgagatggaataaatgatgtagagtttaaaaaaagatgtgtaaaatgaatttgga |
36404388 |
T |
|
| Q |
101 |
tacatcaagttgcatggagagtatcagtaaaaaattt-aggtatttcatgcaattactagaagaggacttaccaaagagaagttctcattggacctttct |
199 |
Q |
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|| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36404389 |
taaatcaagttgcatggagagtatcagtaaaattttttaggtatttcatgcaattactagaagaggacttaccaaagagaagttctcattggacctttct |
36404488 |
T |
|
| Q |
200 |
atgttctccacatccaaagcagtagtttccttcacctt |
237 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
36404489 |
atgttctgcacatccaaagcagtagtttccttcacctt |
36404526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 36395843 - 36395933
Alignment:
| Q |
142 |
atttcatgcaattactagaagaggacttaccaaagagaagttctcattggacctttctatgttctccacatccaaagcagtagtttccttc |
232 |
Q |
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| T |
36395843 |
atttcatgctattattagaaggtgacttaccaaagaaaagttctcattagacctttctatgttcagcacatccaaagcagtagtatccttc |
36395933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37140201 - 37140235
Alignment:
| Q |
1 |
aaaacaaaaactatttcaaagaggctctatatgtt |
35 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
37140201 |
aaaacaaaaactatttcaaacaggctctatatgtt |
37140235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 23275594 - 23275622
Alignment:
| Q |
1 |
aaaacaaaaactatttcaaagaggctcta |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
23275594 |
aaaacaaaaactatttcaaagaggctcta |
23275622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 30204715 - 30204743
Alignment:
| Q |
1 |
aaaacaaaaactatttcaaagaggctcta |
29 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
30204715 |
aaaacaaaaactatttcaaagaggctcta |
30204743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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