View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1741_low_22 (Length: 207)
Name: NF1741_low_22
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1741_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 191
Target Start/End: Complemental strand, 9796162 - 9795999
Alignment:
| Q |
24 |
ctcctaggagtatgaccggcaacaacaagagtagagaccaaaaggagattaaggaagagaatgaaaatggacccaacaacaccctttgaacccattttgc |
123 |
Q |
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| T |
9796162 |
ctcctaggagtatgactggcaacaa---gagtagagaccaaaaggagattaaggaagataatgaaaatggaccc---aacaccctttgaacccattttgc |
9796069 |
T |
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| Q |
124 |
aaataatgctga--nnnnnnnatccaataatgaattgcttgtggttgatgagtgaatctgatgaggtaag |
191 |
Q |
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| T |
9796068 |
aaataatgctgatttttttttttccaacaatgaattgcttgtggttgatgagtgaatctgacgaggtaag |
9795999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 9802151 - 9802046
Alignment:
| Q |
24 |
ctcctaggagtatgaccggcaacaacaagagtagagaccaaaaggagattaaggaagagaatgaaaatggacccaacaacaccctttgaacccattttgc |
123 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
9802151 |
ctcctaggagtatgactggcaacaa---gagtagagaccaaaaggagattaaggaagataatgaaaatggaccc---aacaccctttgaacccattttgc |
9802058 |
T |
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| Q |
124 |
aaataatgctga |
135 |
Q |
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|||||||||||| |
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| T |
9802057 |
aaataatgctga |
9802046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 9755724 - 9755644
Alignment:
| Q |
48 |
acaagagtagagaccaaaaggagattaaggaagagaatgaaaatggacccaacaacaccctttgaacccattttgcaaataatg |
131 |
Q |
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| T |
9755724 |
acaagagtagagacaaaaatgagatgaaggaagagaatgaaaatggatc---ctacaccctttaaacccattttgtaaataatg |
9755644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 9781263 - 9781210
Alignment:
| Q |
48 |
acaagagtagagaccaaaaggagattaaggaagagaatgaaaatggacccaaca |
101 |
Q |
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||||||||||| || |||| ||||||||||||||||||||||||||| |||||| |
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| T |
9781263 |
acaagagtagatacaaaaatgagattaaggaagagaatgaaaatggatccaaca |
9781210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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