View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1741_low_3 (Length: 543)
Name: NF1741_low_3
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1741_low_3 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 268 - 527
Target Start/End: Original strand, 10448577 - 10448836
Alignment:
| Q |
268 |
caatattcatgcataatgcattaaaaggtaatgtttgctttctgttgattttgcgaagaagtttctttatgacgagtataggaacttaactatgatgcca |
367 |
Q |
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| T |
10448577 |
caatattcatgcataatgcattaaaaggtaatgtttgctttctgttgattttgcgaagaagtttctttatgacgagtataggaacttaactatgatgcca |
10448676 |
T |
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| Q |
368 |
ctctaattttcctgacccttgttttttcgtgctgttataaatgagtagcggacaattgcaatttttaaggtatgacagctgactcgtatgaatcaaaata |
467 |
Q |
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| T |
10448677 |
ctctaattttcccgacccttgttttttcgtgctgttataaatgagtagcggacaattgcaatttttaaggtatgacagctgactcgtatgaatcaaaata |
10448776 |
T |
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| Q |
468 |
agtattgatctgagcttcccttgatcgtgaaactatagggtaaatttataaaattgaatt |
527 |
Q |
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| T |
10448777 |
agtattgatctgagcttcccttgatcgtgaaactatagggtaaatttataaaattgaatt |
10448836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 10448306 - 10448549
Alignment:
| Q |
17 |
attataaacttgtatttcagtgtgtttataacactgtgaataaattaccgaggttattttggggtttggctgttacaacatgagaagaatatcttatctt |
116 |
Q |
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| T |
10448306 |
attataaacttgtatttcagtgtgtttataacactgtgaataaattactgaggttattttggggtttgactgttacaacatgagaagaatatcttatctt |
10448405 |
T |
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| Q |
117 |
gaagagttttcagtgttgatcagttcatctttgttgattatgtctctgattctttgtttaggaactatcacgactgttaattgtagaatcgaacttaatg |
216 |
Q |
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| T |
10448406 |
gaagagttttcagtgttgatcagttcatctttgttgattatgtctctgattctttgtttaggaactatcacgactgttaattgtagaatcaaacttaatg |
10448505 |
T |
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| Q |
217 |
taaaccaaaaggacaatgttacatatttcatatggtctactaac |
260 |
Q |
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| T |
10448506 |
taaaccaaaaggacaatgttacatatttcatatggtctactaac |
10448549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 480
Target Start/End: Complemental strand, 13207 - 13148
Alignment:
| Q |
421 |
aattgcaatttttaaggtatgacagctgactcgtatgaatcaaaataagtattgatctga |
480 |
Q |
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| T |
13207 |
aattgcaatgtttaaggtttgatagcggacttatatgaatcaaaataagtattgatctga |
13148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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