View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1741_low_4 (Length: 507)

Name: NF1741_low_4
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1741_low_4
NF1741_low_4
[»] chr5 (7 HSPs)
chr5 (349-479)||(24136746-24136872)
chr5 (187-278)||(24136584-24136675)
chr5 (37-89)||(24135607-24135659)
chr5 (439-496)||(11335379-11335437)
chr5 (188-245)||(11335661-11335716)
chr5 (413-493)||(24137044-24137123)
chr5 (413-492)||(24136889-24136969)
[»] chr4 (4 HSPs)
chr4 (349-497)||(16870588-16870736)
chr4 (188-278)||(16870242-16870332)
chr4 (420-496)||(54147718-54147794)
chr4 (448-502)||(54147870-54147925)
[»] chr7 (7 HSPs)
chr7 (349-492)||(46963810-46963953)
chr7 (349-502)||(44338226-44338374)
chr7 (413-502)||(44338377-44338466)
chr7 (413-496)||(44338469-44338552)
chr7 (413-494)||(15623095-15623176)
chr7 (413-487)||(15623009-15623083)
chr7 (413-494)||(15623188-15623269)
[»] chr8 (5 HSPs)
chr8 (349-502)||(20241903-20242051)
chr8 (349-502)||(20251016-20251164)
chr8 (413-502)||(20242054-20242143)
chr8 (413-502)||(20250924-20251013)
chr8 (413-496)||(20242146-20242229)
[»] chr2 (5 HSPs)
chr2 (349-486)||(8986150-8986287)
chr2 (349-459)||(38584195-38584301)
chr2 (413-496)||(1173291-1173374)
chr2 (413-496)||(1173384-1173467)
chr2 (408-462)||(1173573-1173627)
[»] chr6 (7 HSPs)
chr6 (349-497)||(21861990-21862133)
chr6 (188-278)||(21861793-21861884)
chr6 (380-502)||(13167359-13167480)
chr6 (190-278)||(10741328-10741417)
chr6 (413-493)||(21862239-21862319)
chr6 (192-278)||(13167182-13167269)
chr6 (413-493)||(21862142-21862222)
[»] chr3 (3 HSPs)
chr3 (412-502)||(42530733-42530823)
chr3 (188-274)||(50295292-50295379)
chr3 (408-496)||(46692053-46692141)
[»] chr1 (2 HSPs)
chr1 (420-502)||(15630024-15630107)
chr1 (437-492)||(15629942-15629997)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 349 - 479
Target Start/End: Original strand, 24136746 - 24136872
Alignment:
Q  349 gtgagtcaaaatagcgcttacaattggtttgtttgtttgtttgtttggtatgtaaagcactcataatttgcttgttgggtgaatcgagttctcacattat 448  Q
    |||||||||||||| ||| |||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24136746 gtgagtcaaaatagtgctcacaattggtttgttcgttt----gtttggtatgtaaagcactcataatttgcttgttgggtgagtcgagttctcacattat 24136841  T
Q  449 ggttgtttggtgagcgtgtgcttacaatttg 479  Q
    |||||||||||||||||||||||||||||||    
T  24136842 ggttgtttggtgagcgtgtgcttacaatttg 24136872  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 24136584 - 24136675
Alignment:
Q  187 gagtcttcgtgtgtttcattgtgtttgtgtatggttaattggttgtttgtctatgtctgttttgcttactttggttcagcttgtcttggttc 278  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||    
T  24136584 gagtcttcgtgtgtttcattgtgtttgtgtttggttaattggttgtttgtctatgtctgtcttggttgctttggttcagcttgtcttggttc 24136675  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 24135607 - 24135659
Alignment:
Q  37 ttgctgcaatcatggttgcttttgggattttcattaaaattggattgaaaggt 89  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24135607 ttgctgcaatcatggttgcttttgagattttcattaaaattggattgaaaggt 24135659  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 496
Target Start/End: Complemental strand, 11335437 - 11335379
Alignment:
Q  439 ctcacattatggttgtttggtgag-cgtgtgcttacaatttggtttcttctcccccttt 496  Q
    |||||| | ||||||||||||||| ||  |||| |||||||||||||||||||||||||    
T  11335437 ctcacactttggttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttt 11335379  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 11335716 - 11335661
Alignment:
Q  188 agtcttcgtgtgtttcattgtgtttgtgtatggttaattggttgtttgtctatgtctg 245  Q
    ||||||||||||||||  ||| ||||||| |||||||||||||||| |||| ||||||    
T  11335716 agtcttcgtgtgtttc--tgtatttgtgtttggttaattggttgttcgtctctgtctg 11335661  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 493
Target Start/End: Original strand, 24137044 - 24137123
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgag-cgtgtgcttacaatttggtttcttctccccc 493  Q
    |||||| ||||| ||||| || |||||||||||| |||||||||||||||  | ||||| |||||||||||| |||||||||    
T  24137044 aatttggttgtttggtgagtctagttctcacatt-tggttgtttggtgagttgagtgctcacaatttggttt-ttctccccc 24137123  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 492
Target Start/End: Original strand, 24136889 - 24136969
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgag-cgtgtgcttacaatttggtttcttctcccc 492  Q
    |||||| ||||| |||||  ||| |||||||| | ||||||||||||||| || ||||| ||||||| |||||||| ||||    
T  24136889 aatttggttgtttggtgagccgacttctcacaatttggttgtttggtgagtcgagtgctcacaattttgtttcttcccccc 24136969  T

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Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 349 - 497
Target Start/End: Original strand, 16870588 - 16870736
Alignment:
Q  349 gtgagtcaaaatagcgcttacaattggtttgtttgtttgtttgtttggtatgtaaagcactcataatttgcttgttgggtgaatcgagttctcacattat 448  Q
    |||||||||||||| ||| ||||||||||||||  ||||||||||||||  || ||| |||||||||||||||||| ||||| |||| |||||||| | |    
T  16870588 gtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacacttt 16870687  T
Q  449 ggttgtttggtgagcgtgtgcttacaatttggtttcttctccccctttg 497  Q
    ||||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  16870688 ggttgtttggtgagcatgtgctcacaatttggtttcttctccccttttg 16870736  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 188 - 278
Target Start/End: Original strand, 16870242 - 16870332
Alignment:
Q  188 agtcttcgtgtgtttcattgtgtttgtgtatggttaattggttgtttgtctatgtctgttttgcttactttggttcagcttgtcttggttc 278  Q
    |||||||||| ||||| |||||||||||| |||||||||||||||| |||||||||| | ||| ||  |||||||||| ||||||||||||    
T  16870242 agtcttcgtgcgtttctttgtgtttgtgtttggttaattggttgttcgtctatgtctttcttggttgttttggttcagtttgtcttggttc 16870332  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 420 - 496
Target Start/End: Original strand, 54147718 - 54147794
Alignment:
Q  420 ttgttgggtgaatcgagttctcacattatggttgtttggtgagcgt-gtgcttacaatttggtttcttctcccccttt 496  Q
    ||||| ||||| || |||||||||||| |||||||||||||||  | ||||| ||||||||||||||| |||||||||    
T  54147718 ttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctt-tcccccttt 54147794  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 502
Target Start/End: Original strand, 54147870 - 54147925
Alignment:
Q  448 tggttgtttggtgag-cgtgtgcttacaatttggtttcttctccccctttgcttct 502  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||| |||| ||||    
T  54147870 tggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttttgattct 54147925  T

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Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 349 - 492
Target Start/End: Complemental strand, 46963953 - 46963810
Alignment:
Q  349 gtgagtcaaaatagcgcttacaattggtttgtttgtttgtttgtttggtatgtaaagcactcataatttgcttgttgggtgaatcgagttctcacattat 448  Q
    |||||||||||||| ||| ||||||||||||||  ||||||||||||||  || ||| |||||||||||||||||| ||||| |||| |||||||| | |    
T  46963953 gtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacacttt 46963854  T
Q  449 ggttgtttggtgagcgtgtgcttacaatttggtttcttctcccc 492  Q
    ||||||||||||||| |||||| |||||||||||||||||||||    
T  46963853 ggttgtttggtgagcatgtgctcacaatttggtttcttctcccc 46963810  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 349 - 502
Target Start/End: Original strand, 44338226 - 44338374
Alignment:
Q  349 gtgagtcaaaatagcgcttacaattggtttgtttgtttgtttgtttggtatgtaaagcactcataatttgcttgttgggtgaatcgagttctcacattat 448  Q
    |||||||||||||| ||| |||||| ||||||| ||||||||| | |||      ||||||||||||||||||||| ||||| ||||||||||||||| |    
T  44338226 gtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-----agcactcataatttgcttgtttggtgagtcgagttctcacatttt 44338320  T
Q  449 ggttgtttggtgagcgtgtgcttacaatttggtttcttctccccctttgcttct 502  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  44338321 ggttgtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattct 44338374  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 413 - 502
Target Start/End: Original strand, 44338377 - 44338466
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgagcgtgtgcttacaatttggtttcttctccccctttgcttct 502  Q
    |||||| | ||| ||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  44338377 aatttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattct 44338466  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 413 - 496
Target Start/End: Original strand, 44338469 - 44338552
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgagc-gtgtgcttacaatttggtttcttctcccccttt 496  Q
    |||||| ||||| ||||| | ||||||||||||| ||||||| |||||||  ||||||| |||||||||||||||||||||||||    
T  44338469 aatttggttgtttggtgagtagagttctcacatt-tggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttt 44338552  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 494
Target Start/End: Complemental strand, 15623176 - 15623095
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgagc-gtgtgcttacaatttggtttcttctccccct 494  Q
    |||||| ||||| ||||| || |||||||||||| |||||||||||||||  | ||||| ||||||| |||||||||||||||    
T  15623176 aatttggttgtttggtgagtctagttctcacatt-tggttgtttggtgagttgagtgctcacaattttgtttcttctccccct 15623095  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 487
Target Start/End: Complemental strand, 15623083 - 15623009
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgag-cgtgtgcttacaatttggtttcttc 487  Q
    |||||| ||||| ||||| || |||||||||||| ||||||||||||||| |||||||| || ||| |||||||||    
T  15623083 aatttggttgtttggtgagtctagttctcacatt-tggttgtttggtgagtcgtgtgctcacgattcggtttcttc 15623009  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 494
Target Start/End: Complemental strand, 15623269 - 15623188
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgagc-gtgtgcttacaatttggtttcttctccccct 494  Q
    |||||| ||||| ||||| || |||||||||||| || ||||||||||||  | ||||| ||||||| |||||||||||||||    
T  15623269 aatttggttgtttggtgagtctagttctcacatt-tgattgtttggtgagttgagtgctcacaattttgtttcttctccccct 15623188  T

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Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 349 - 502
Target Start/End: Original strand, 20241903 - 20242051
Alignment:
Q  349 gtgagtcaaaatagcgcttacaattggtttgtttgtttgtttgtttggtatgtaaagcactcataatttgcttgttgggtgaatcgagttctcacattat 448  Q
    |||||||||||||| ||| |||||| ||||||| ||||||||| | |||      ||||||||||||||||||||| ||||| ||||||||||||||| |    
T  20241903 gtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-----agcactcataatttgcttgtttggtgagtcgagttctcacatttt 20241997  T
Q  449 ggttgtttggtgagcgtgtgcttacaatttggtttcttctccccctttgcttct 502  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  20241998 ggttgtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattct 20242051  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 349 - 502
Target Start/End: Complemental strand, 20251164 - 20251016
Alignment:
Q  349 gtgagtcaaaatagcgcttacaattggtttgtttgtttgtttgtttggtatgtaaagcactcataatttgcttgttgggtgaatcgagttctcacattat 448  Q
    |||||||||||||| ||| |||||| ||||||| ||||||||| | |||      ||||||||||||||||||||| ||||| ||||||||||||||| |    
T  20251164 gtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-----agcactcataatttgcttgtttggtgagtcgagttctcacatttt 20251070  T
Q  449 ggttgtttggtgagcgtgtgcttacaatttggtttcttctccccctttgcttct 502  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  20251069 ggttgtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattct 20251016  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 413 - 502
Target Start/End: Original strand, 20242054 - 20242143
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgagcgtgtgcttacaatttggtttcttctccccctttgcttct 502  Q
    |||||| | ||| ||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  20242054 aatttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattct 20242143  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 413 - 502
Target Start/End: Complemental strand, 20251013 - 20250924
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgagcgtgtgcttacaatttggtttcttctccccctttgcttct 502  Q
    |||||| | ||| ||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  20251013 aatttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattct 20250924  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 413 - 496
Target Start/End: Original strand, 20242146 - 20242229
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgagc-gtgtgcttacaatttggtttcttctcccccttt 496  Q
    |||||| ||||| ||||| | ||||||||||||| ||||||| |||||||  ||||||| |||||||||||||||||||||||||    
T  20242146 aatttggttgtttggtgagtagagttctcacatt-tggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttt 20242229  T

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Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 349 - 486
Target Start/End: Original strand, 8986150 - 8986287
Alignment:
Q  349 gtgagtcaaaatagcgcttacaattggtttgtttgtttgtttgtttggtatgtaaagcactcataatttgcttgttgggtgaatcgagttctcacattat 448  Q
    |||||||||||||| ||| ||||||||||||||  ||||||||||||||  || ||| |||||||||||||||||| ||||| |||| |||||||| | |    
T  8986150 gtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacacttt 8986249  T
Q  449 ggttgtttggtgagcgtgtgcttacaatttggtttctt 486  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  8986250 ggttgtttggtgagcatgtgctcacaatttggtttctt 8986287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 459
Target Start/End: Complemental strand, 38584301 - 38584195
Alignment:
Q  349 gtgagtcaaaatagcgcttacaattggtttgtttgtttgtttgtttggtatgtaaagcactcataatttgcttgttgggtgaatcgagttctcacattat 448  Q
    |||||||||||||| ||| |||||| |   ||||||| |||||||||||  |||| ||||||| |||||||||||| ||||| |||||| |||||||| |    
T  38584301 gtgagtcaaaatagtgctcacaatttg---gtttgttcgtttgtttggtgggtaa-gcactcacaatttgcttgtttggtgagtcgagtgctcacatttt 38584206  T
Q  449 ggttgtttggt 459  Q
    |||||||||||    
T  38584205 ggttgtttggt 38584195  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 496
Target Start/End: Complemental strand, 1173374 - 1173291
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgag-cgtgtgcttacaatttggtttcttctcccccttt 496  Q
    |||||| ||||| ||||| || |||||||||||| || |||||| ||||| || ||||| |||||||||||||||||||||||||    
T  1173374 aatttggttgtttggtgagtctagttctcacatt-tgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttt 1173291  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 496
Target Start/End: Complemental strand, 1173467 - 1173384
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgagcgt-gtgcttacaatttggtttcttctcccccttt 496  Q
    |||||| ||||| ||||| || | |||||||||| |||||||||||||||  | ||||  |||||||||||||||||||||||||    
T  1173467 aatttggttgtttggtgagtctaattctcacatt-tggttgtttggtgagtctagtgcacacaatttggtttcttctcccccttt 1173384  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 1173627 - 1173573
Alignment:
Q  408 ctcataatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgag 462  Q
    ||||||||||| ||||| ||||| |||||| |||| ||| |||||||||||||||    
T  1173627 ctcataatttgtttgtttggtgagtcgagtactcatattttggttgtttggtgag 1173573  T

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Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 349 - 497
Target Start/End: Original strand, 21861990 - 21862133
Alignment:
Q  349 gtgagtcaaaatagcgcttacaattggtttgtttgtttgtttgtttggtatgtaaagcactcataatttgcttgttgggtgaatcgagttctcacattat 448  Q
    ||||||||||||||  || |||||||||||||||||||||||| | ||     ||||| |||| |||||||||||| ||||| |||| |||||||||| |    
T  21861990 gtgagtcaaaatagttctcacaattggtttgtttgtttgtttggtggg-----aaagcgctcacaatttgcttgtttggtgagtcgaattctcacatttt 21862084  T
Q  449 ggttgtttggtgagcgtgtgcttacaatttggtttcttctccccctttg 497  Q
    ||||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  21862085 ggttgtttgttgagcgtgtgctcacaatttggtttcttctccccttttg 21862133  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 278
Target Start/End: Original strand, 21861793 - 21861884
Alignment:
Q  188 agtcttcgtgtgtttcattgtgtttgtgtatggttaattggttgtttgtctatgtctgt-tttgcttactttggttcagcttgtcttggttc 278  Q
    ||||||||||||| || |||||||||||| |||||||||||||||| |||||||| ||| | || || |||||| |||||||||||||||||    
T  21861793 agtcttcgtgtgtctctttgtgtttgtgtttggttaattggttgttcgtctatgtatgtctctggttgctttggctcagcttgtcttggttc 21861884  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 502
Target Start/End: Original strand, 13167359 - 13167480
Alignment:
Q  380 tttgtttgtttgtttggtatgtaaagcactcataatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgagcgtgtgcttacaatttg 479  Q
    ||||||||||||||||||  || |||  |||  |||||||||||| ||||| |||| |||||||| | | |||||||| ||||||| |||| ||||||||    
T  13167359 tttgtttgtttgtttggtgggtcaagtgctcgcaatttgcttgtttggtgagtcgaattctcacact-ttgttgtttgctgagcgtatgctcacaatttg 13167457  T
Q  480 gtttcttctccccctttgcttct 502  Q
    || |||||||||| |||| ||||    
T  13167458 gtgtcttctccccttttggttct 13167480  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 278
Target Start/End: Original strand, 10741328 - 10741417
Alignment:
Q  190 tcttcgtgtgtttcattgtgtttgtgtatggttaattggttgtttgtctatgtctgt-tttgcttactttggttcagcttgtcttggttc 278  Q
    |||||||||||||| |||||||||||| || ||||||||||||| || ||||||| | |||| ||  ||| |||||||||||||| ||||    
T  10741328 tcttcgtgtgtttctttgtgtttgtgtttgattaattggttgttcgtttatgtctatctttggttgatttagttcagcttgtctttgttc 10741417  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 493
Target Start/End: Original strand, 21862239 - 21862319
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgag-cgtgtgcttacaatttggtttcttctccccc 493  Q
    |||||| ||||| ||||| || || ||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||    
T  21862239 aatttggttgtttggtgagtctagctctcacatt-tggttgtttggtgagtcgagtgctcacaatttggtttcttctccccc 21862319  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 13167182 - 13167269
Alignment:
Q  192 ttcgtgtgtttcattgtgtttgtgtatggttaattggttgtttgtctatgtctgt-tttgcttactttggttcagcttgtcttggttc 278  Q
    ||||||||| ||  ||||||||| | |||||||||||||||| || ||||| ||| | || || |||||| |||||||||||||||||    
T  13167182 ttcgtgtgtctctctgtgtttgtatttggttaattggttgttcgtttatgtttgtctctggttgctttgggtcagcttgtcttggttc 13167269  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 493
Target Start/End: Original strand, 21862142 - 21862222
Alignment:
Q  413 aatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgag-cgtgtgcttacaatttggtttcttctccccc 493  Q
    |||||| ||||| ||||| || |||||||||||| ||||||||||||||| || ||||| |  |||||||||| ||||||||    
T  21862142 aatttggttgtttggtgagtctagttctcacatt-tggttgtttggtgagtcgagtgctcaatatttggtttcctctccccc 21862222  T

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Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 412 - 502
Target Start/End: Original strand, 42530733 - 42530823
Alignment:
Q  412 taatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgagcgtgtgcttacaatttggtttcttctccccctttgcttct 502  Q
    ||||||| ||||| ||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  42530733 taatttggttgtttggtgagtcgagttctcacactttggttgtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattct 42530823  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 50295292 - 50295379
Alignment:
Q  188 agtcttcgtgtgtttcattgtgtttgtgtatggttaattggttgtttgtctatgtctgt-tttgcttactttggttcagcttgtcttg 274  Q
    |||||| ||||||||| |||||||||||| || |||||||||||||||||||||||||| | || || ||||||||||||||||||||    
T  50295292 agtcttggtgtgtttctttgtgtttgtgtttgattaattggttgtttgtctatgtctgtctatggttgctttggttcagcttgtcttg 50295379  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 496
Target Start/End: Complemental strand, 46692141 - 46692053
Alignment:
Q  408 ctcataatttgcttgttgggtgaatcgagttctcacattatggttgtttggtgag-cgtgtgcttacaatttggtttcttctcccccttt 496  Q
    |||| |||||| ||||| ||||| || | |||||||||| | ||||||||||||| || ||||| |||||||||||||||||| ||||||    
T  46692141 ctcacaatttggttgtttggtgagtctaattctcacatt-tagttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttt 46692053  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 502
Target Start/End: Complemental strand, 15630107 - 15630024
Alignment:
Q  420 ttgttgggtgaatcgagttctcacattatggttgtttggtgag-cgtgtgcttacaatttggtttcttctccccctttgcttct 502  Q
    ||||| ||||| |||||| |||||| | ||||||||||||||| || ||||| ||||||||||||||||||||| |||| ||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttttgattct 15630024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 492
Target Start/End: Complemental strand, 15629997 - 15629942
Alignment:
Q  437 ttctcacattatggttgtttggtgag-cgtgtgcttacaatttggtttcttctcccc 492  Q
    |||||||||| ||||||||||||||| || ||||| |||||||||||||||||||||    
T  15629997 ttctcacatt-tggttgtttggtgagtcgagtgctcacaatttggtttcttctcccc 15629942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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