View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1741_low_5 (Length: 462)
Name: NF1741_low_5
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1741_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Original strand, 54262789 - 54263219
Alignment:
| Q |
16 |
cataattggttttagggttgcgttagaaaaataatgcggaacggagaggatactttattttggagtgaccattgggtggg-aggggaggtcattaaaaat |
114 |
Q |
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| T |
54262789 |
cataattggttttagggttgcgttagaaaaataatgcggaacggagaggatactttattttggagtgaccattgggtggggaggggaggtcattaaaaat |
54262888 |
T |
|
| Q |
115 |
gagaactgatcaactattttccttatctttgaacaaagaggccaaggtgatggtgttgaagagggaaattggtgggagccgggtgtgggattttaggtgg |
214 |
Q |
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| T |
54262889 |
gagaactgatcaactattttccttatctttgaacaaagaggctaaggtgatggtgttgaagagggaaattggtgggaaccgggtgtgggattttaggtgg |
54262988 |
T |
|
| Q |
215 |
agaagagagttattcaagcggtaagcggaattgcttcatcgcatgatcgaggaattagaaaaggttatcatcatggagggtagaaaaagattgtatagtt |
314 |
Q |
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| T |
54262989 |
agaagagagttattctagcggtaagcggaattgcttcatcgcatgattgaggaattagaaaaggttatcatcatggagggtagaaaaagattgtatagtt |
54263088 |
T |
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| Q |
315 |
tgggtggaggactcgtcaaatttctattctgttaagtcggcttacaatgtcttaatggaagatagcaatcctggatcaaccactcaacaataaggcgtag |
414 |
Q |
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| T |
54263089 |
tgggtggaggactcgtcaaatttctattctgttaagtcggcttacaatgtcttaatggaagatagcaatcctggatcaaccactcaacaataaggcgtag |
54263188 |
T |
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| Q |
415 |
cataaattcattctgttgaaagttgtggtgt |
445 |
Q |
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| T |
54263189 |
cataaattcattctgttgaaagttgtggtgt |
54263219 |
T |
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