View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1741_low_7 (Length: 419)
Name: NF1741_low_7
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1741_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 14347285 - 14347666
Alignment:
| Q |
17 |
tagggagtttgacaaaggtgaggactcattatggaatttgtccatcgatcgatctaacatcgtagatgagcatataatgcgtccaactgacgaagcaaaa |
116 |
Q |
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| T |
14347285 |
tagggagtttgacaaaggtgaggactcattgtggaatttgtccatcgatcgatctaacatcatagatgagcatataatgcgtccaactgacgaagcaaaa |
14347384 |
T |
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| Q |
117 |
tttgctagagctggggatattggtgtttgcaaagcactaacttctcacaatctgaggtctattgccatggttcatcatcttgggcatgcaattattcaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14347385 |
tttgctagagctggggatattggtgtttgcaaagcactaacttctcacaatctgaggtctattgccatggttcatcatcttgggcatgcaattattcaaa |
14347484 |
T |
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| Q |
217 |
aggatgttagcattgagactttaaggaacaaagtcgataacttagagaaagagttagctgccgaaaaagagaagttggccgctgcatattccaagttgaa |
316 |
Q |
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|||||||||||||||| ||||||| ||||||| | | ||||||||||||||| || ||| |||||| | ||||| ||| ||| |||||||| ||||| |
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| T |
14347485 |
aggatgttagcattgacactttaaagaacaaaattgctaacttagagaaagaattggct---gaaaaaaacaagttagccactgtttattccaatttgaa |
14347581 |
T |
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| Q |
317 |
acaagagaagaaagatttgg-------ctgccaagtacaagactgagtctcttctttggactcaacaaaagaaaaagttggagga |
394 |
Q |
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| T |
14347582 |
aaaagagaagaaagatttggctgccaactgccaagtacaagactgagtctcttctttggactcaacaaaagaaaaagttggagga |
14347666 |
T |
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