View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1741_low_8 (Length: 392)

Name: NF1741_low_8
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1741_low_8
NF1741_low_8
[»] chr5 (13 HSPs)
chr5 (12-283)||(24136981-24137261)
chr5 (191-392)||(24136819-24137012)
chr5 (242-352)||(24137005-24137114)
chr5 (12-99)||(9512024-9512111)
chr5 (274-346)||(24136949-24137021)
chr5 (243-311)||(9511777-9511845)
chr5 (222-287)||(11335370-11335437)
chr5 (222-308)||(9511811-9511899)
chr5 (102-190)||(11335335-11335423)
chr5 (34-95)||(11335330-11335391)
chr5 (34-89)||(9511926-9511981)
chr5 (81-148)||(9512038-9512106)
chr5 (40-96)||(27314817-27314873)
[»] chr8 (9 HSPs)
chr8 (184-392)||(20241975-20242183)
chr8 (213-392)||(20250913-20251092)
chr8 (213-392)||(20242067-20242247)
chr8 (191-313)||(20241962-20242084)
chr8 (191-313)||(20250983-20251105)
chr8 (34-99)||(20242326-20242391)
chr8 (34-99)||(20250769-20250834)
chr8 (243-287)||(20241957-20242001)
chr8 (243-287)||(20251066-20251110)
[»] chr7 (21 HSPs)
chr7 (184-392)||(44338298-44338506)
chr7 (213-392)||(44338390-44338570)
chr7 (184-346)||(15623046-15623210)
chr7 (157-346)||(15623104-15623303)
chr7 (191-313)||(44338285-44338407)
chr7 (235-346)||(15623006-15623117)
chr7 (12-99)||(21813955-21814043)
chr7 (157-256)||(15623197-15623306)
chr7 (243-306)||(21813824-21813887)
chr7 (238-313)||(46963815-46963889)
chr7 (238-314)||(11828573-11828649)
chr7 (30-86)||(46963681-46963737)
chr7 (12-99)||(46963508-46963600)
chr7 (314-392)||(46963798-46963876)
chr7 (34-99)||(44338649-44338714)
chr7 (243-287)||(11828609-11828653)
chr7 (246-286)||(24487088-24487128)
chr7 (223-311)||(21813850-21813940)
chr7 (45-87)||(24486942-24486984)
chr7 (243-287)||(11828640-11828684)
chr7 (243-287)||(44338280-44338324)
[»] chr6 (21 HSPs)
chr6 (157-392)||(21862062-21862311)
chr6 (194-392)||(13167405-13167604)
chr6 (191-329)||(21862223-21862363)
chr6 (184-301)||(28063583-28063699)
chr6 (184-314)||(21862048-21862179)
chr6 (212-346)||(28063518-28063652)
chr6 (30-99)||(22860908-22860976)
chr6 (12-147)||(9291085-9291228)
chr6 (275-346)||(21862298-21862371)
chr6 (34-99)||(22860941-22861007)
chr6 (202-314)||(13167391-13167502)
chr6 (67-152)||(22860917-22861008)
chr6 (30-99)||(22860797-22860869)
chr6 (12-55)||(28063465-28063508)
chr6 (240-280)||(10741529-10741569)
chr6 (243-310)||(13097903-13097970)
chr6 (34-99)||(22860762-22860829)
chr6 (250-287)||(13097895-13097932)
chr6 (243-287)||(21862044-21862088)
chr6 (102-153)||(22860950-22861002)
chr6 (248-312)||(28063715-28063777)
[»] chr1 (12 HSPs)
chr1 (12-306)||(15629796-15630107)
chr1 (223-392)||(15629931-15630101)
chr1 (248-314)||(19825091-19825157)
chr1 (243-287)||(19825117-19825161)
chr1 (34-151)||(3775072-3775188)
chr1 (34-97)||(12177164-12177227)
chr1 (240-314)||(2072366-2072440)
chr1 (240-314)||(2075896-2075970)
chr1 (243-287)||(2072400-2072444)
chr1 (243-287)||(2075930-2075974)
chr1 (36-99)||(9168207-9168271)
chr1 (314-346)||(15629930-15629962)
[»] chr2 (17 HSPs)
chr2 (138-346)||(1173283-1173501)
chr2 (184-287)||(1173430-1173535)
chr2 (17-130)||(32290742-32290863)
chr2 (34-99)||(38583967-38584033)
chr2 (239-313)||(8986214-8986287)
chr2 (12-99)||(8986502-8986594)
chr2 (30-123)||(38583998-38584102)
chr2 (30-86)||(8986368-8986424)
chr2 (34-130)||(38583934-38584035)
chr2 (243-287)||(38584202-38584246)
chr2 (251-313)||(1173560-1173622)
chr2 (34-99)||(32290709-32290775)
chr2 (223-314)||(38584083-38584176)
chr2 (244-314)||(38584168-38584242)
chr2 (243-287)||(38584136-38584180)
chr2 (243-313)||(1173583-1173653)
chr2 (243-283)||(32290558-32290598)
[»] chr3 (10 HSPs)
chr3 (184-314)||(46692006-46692137)
chr3 (223-336)||(42530711-42530824)
chr3 (238-346)||(46691968-46692077)
chr3 (314-392)||(42530747-42530825)
chr3 (30-230)||(42530725-42530947)
chr3 (12-60)||(50295902-50295950)
chr3 (12-99)||(42530947-42531042)
chr3 (12-79)||(46691887-46691955)
chr3 (251-287)||(50295550-50295586)
chr3 (258-314)||(50295554-50295610)
[»] chr4 (17 HSPs)
chr4 (238-392)||(16870665-16870820)
chr4 (30-313)||(16870652-16870955)
chr4 (274-344)||(54147835-54147905)
chr4 (191-275)||(54147811-54147896)
chr4 (223-307)||(54147717-54147802)
chr4 (223-279)||(54147869-54147926)
chr4 (244-311)||(42265426-42265492)
chr4 (38-99)||(24225681-24225742)
chr4 (34-99)||(16871105-16871172)
chr4 (30-99)||(16871033-16871105)
chr4 (243-287)||(24225502-24225546)
chr4 (15-99)||(24225647-24225735)
chr4 (12-55)||(54147912-54147955)
chr4 (314-346)||(54147895-54147927)
chr4 (274-392)||(54147724-54147843)
chr4 (12-67)||(16871262-16871318)
chr4 (35-79)||(24225633-24225677)
[»] scaffold0499 (2 HSPs)
scaffold0499 (250-287)||(7304-7341)
scaffold0499 (242-310)||(7265-7333)
[»] scaffold0025 (1 HSPs)
scaffold0025 (259-289)||(154938-154968)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 24137261 - 24136981
Alignment:
Q  12 atcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgcattagaagaacca 111  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24137261 atcatcaaaagtgggagaagtgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgcattagaagaacca 24137162  T
Q  112 aaagggggagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagac 203  Q
    ||||||||||||| |||||| |||| |||||||||||||||| ||| |||||||||||||||||||||| |||||||||        |||||||||||||    
T  24137161 aaagggggagaagtgcaatctattagaagaaccaaaaggggggagaaaaaccaaattgtgagcactcaactcaccaaacaaccaaatgtgagaactagac 24137062  T
Q  204 tcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattg 283  Q
    |||||||||||||||||| |||||||| | |||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  24137061 tcaccaaacaaccaaattgaagaatcaaagggggagaagaaaccaaattgtgagaactagactcaccaaacaaccaaattg 24136981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 191 - 392
Target Start/End: Complemental strand, 24137012 - 24136819
Alignment:
Q  191 gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggg-aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 289  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24137012 gtgagaactagactcaccaaacaaccaaattgaagaatcagaaggggggaagaaacaaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 24136913  T
Q  290 gtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagaacacgcccaccaaacaacaataatgtgagaactcgattc 389  Q
    |||||||||||||||||||||||||||||||||||||         || ||||||||||| |||||| ||||||||||| ||||||||||||||||| ||    
T  24136912 gtcggctcaccaaacaaccaaattgaagaatcaaaag---------aagcaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgactc 24136822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 24137114 - 24137005
Alignment:
Q  242 aaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaa 341  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||    
T  24137114 aaaccaaattgtgagcactcaactcaccaaacaaccaaat-gtgagaactagactcaccaaacaaccaaattgaagaatcaaagggggagaagaaaccaa 24137016  T
Q  342 attgtaagaac 352  Q
    ||||| |||||    
T  24137015 attgtgagaac 24137005  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 9512111 - 9512024
Alignment:
Q  12 atcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 99  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||||||| |||||||| |||||||||||||   |||||||||||    
T  9512111 atcatcaaaagtgggagaagtgcaatcaaaagaatcaaaagggggagaaatgcaatcaatgagaagaaccaaaacaaggagaagtgca 9512024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 24137021 - 24136949
Alignment:
Q  274 aaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgt 346  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||| |||||| |||||||| |||||||    
T  24137021 aaccaaattgtgagaactagactcaccaaacaaccaaattgaagaatcagaaggggggaagaaacaaaattgt 24136949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 9511845 - 9511777
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 311  Q
    ||||||||||||||||||||||||||||||||||| || |||||| | ||| |||||||||||| ||||    
T  9511845 aaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaaacaaacaaa 9511777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 11335370 - 11335437
Alignment:
Q  222 aaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    ||||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  11335370 aaagaatcaaaagggggagaagaaaccaaattgtgagcattcgactcaccaaacaaccaaagtgtgag 11335437  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 9511899 - 9511811
Alignment:
Q  222 aaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaacc 308  Q
    ||||||||| ||||||||  ||||| ||||||||||| | |  ||||||||||||||||||||||||| | ||| ||||||||||||||    
T  9511899 aaagaatcaaaagggggataagaaatcaaattgtgagtatttaactcaccaaacaaccaaattgtgagcactcgactcaccaaacaacc 9511811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 11335335 - 11335423
Alignment:
Q  102 agaagaaccaaaagggggagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac 190  Q
    ||||||| ||| ||||||||||| | ||||||| ||||||| ||||||||||   ||||||||||||||||||| || | |||||||||    
T  11335335 agaagaatcaatagggggagaagtgtaatcaatcaaaagaatcaaaagggggagaagaaaccaaattgtgagcattcgactcaccaaac 11335423  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 11335330 - 11335391
Alignment:
Q  34 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaag 95  Q
    |||||||||||||||| |||||||||| |  ||||||||| ||||| |||||||||||||||    
T  11335330 caatcagaagaatcaatagggggagaagtgtaatcaatcaaaagaatcaaaagggggagaag 11335391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 9511981 - 9511926
Alignment:
Q  34 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggg 89  Q
    |||| ||||||||||| | |||||||| | |||||||||||||||| |||||||||    
T  9511981 caatgagaagaatcaatatggggagaagtgcaatcaatcagaagaatcaaaagggg 9511926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 9512106 - 9512038
Alignment:
Q  81 caaaagggggagaagtgcatt-agaagaaccaaaagggggagaagcgcaatcaattaaaagaaccaaaa 148  Q
    |||||| |||||||||||| | | ||||| ||||||||||||||  ||||||||| | |||||||||||    
T  9512106 caaaagtgggagaagtgcaatcaaaagaatcaaaagggggagaaatgcaatcaatgagaagaaccaaaa 9512038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 27314873 - 27314817
Alignment:
Q  40 gaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagt 96  Q
    |||||||||||| |||||||| | |||||||||| || || |||||||| |||||||    
T  27314873 gaagaatcaaaatggggagaagtgcaatcaatcacaaaaatcaaaagggagagaagt 27314817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 184 - 392
Target Start/End: Complemental strand, 20242183 - 20241975
Alignment:
Q  184 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaatt 282  Q
    |||||| |||||||||  |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |    
T  20242183 accaaatgtgagaactctactcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagt 20242085  T
Q  283 gtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagaacacgcccaccaaacaacaataatgtgagaac 382  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||| | |||||||||||    
T  20242084 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaaatgtgagaac 20241985  T
Q  383 tcgattcacc 392  Q
    |||| |||||    
T  20241984 tcgactcacc 20241975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 213 - 392
Target Start/End: Original strand, 20250913 - 20251092
Alignment:
Q  213 aaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 311  Q
    ||||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||| ||| |||||||||| ||||||    
T  20250913 aaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaa 20251011  T
Q  312 ttgaagaatcaaaaggggagaagaaaccaaattgtaagaacacgcccaccaaacaacaataatgtgagaactcgattcacc 392  Q
    ||||||||||||||||||||||||||||||||||| || |||||| ||||||||||| | ||||||||||||||| |||||    
T  20251012 ttgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaaatgtgagaactcgactcacc 20251092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 213 - 392
Target Start/End: Complemental strand, 20242247 - 20242067
Alignment:
Q  213 aaccaaattaaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 310  Q
    ||||||||| |||||||| ||||||||  |||||||||||||||||||| | |||||||| ||||||||| |||||||| ||  ||||||||||||||||    
T  20242247 aaccaaattgaagaatcaaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaa-tgtgagaactctactcaccaaacaaccaa 20242149  T
Q  311 attgaagaatcaaaaggggagaagaaaccaaattgtaagaacacgcccaccaaacaacaataatgtgagaactcgattcacc 392  Q
    |||||||||||||||||||||||||||||||||||| || |||||| ||||||||||| | | ||||||||||||| |||||    
T  20242148 attgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaagtgtgagaactcgactcacc 20242067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 191 - 313
Target Start/End: Complemental strand, 20242084 - 20241962
Alignment:
Q  191 gtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 289  Q
    ||||||||| |||||||||||| |||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||    
T  20242084 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaa 20241986  T
Q  290 gtcggctcaccaaacaaccaaatt 313  Q
     ||| |||||||||||| ||||||    
T  20241985 ctcgactcaccaaacaagcaaatt 20241962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 191 - 313
Target Start/End: Original strand, 20250983 - 20251105
Alignment:
Q  191 gtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 289  Q
    ||||||||| |||||||||||| |||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||    
T  20250983 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaa 20251081  T
Q  290 gtcggctcaccaaacaaccaaatt 313  Q
     ||| |||||||||||| ||||||    
T  20251082 ctcgactcaccaaacaagcaaatt 20251105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 20242391 - 20242326
Alignment:
Q  34 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 99  Q
    |||||||||||||| | | ||||| || | |||||||||| ||||| |||||||||||||||||||    
T  20242391 caatcagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgca 20242326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 20250769 - 20250834
Alignment:
Q  34 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 99  Q
    |||||||||||||| | | ||||| || | |||||||||| ||||| |||||||||||||||||||    
T  20250769 caatcagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgca 20250834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 20242001 - 20241957
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    ||||||| |||||| |||||||||||||||||| |||||| ||||    
T  20242001 aaccaaaatgtgagaactcgactcaccaaacaagcaaattatgag 20241957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 20251066 - 20251110
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    ||||||| |||||| |||||||||||||||||| |||||| ||||    
T  20251066 aaccaaaatgtgagaactcgactcaccaaacaagcaaattatgag 20251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 184 - 392
Target Start/End: Complemental strand, 44338506 - 44338298
Alignment:
Q  184 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaatt 282  Q
    |||||| |||||||||  |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |    
T  44338506 accaaatgtgagaactctactcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagt 44338408  T
Q  283 gtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagaacacgcccaccaaacaacaataatgtgagaac 382  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||| | |||||||||||    
T  44338407 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaaatgtgagaac 44338308  T
Q  383 tcgattcacc 392  Q
    |||| |||||    
T  44338307 tcgactcacc 44338298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 213 - 392
Target Start/End: Complemental strand, 44338570 - 44338390
Alignment:
Q  213 aaccaaattaaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 310  Q
    ||||||||| |||||||| ||||||||  |||||||||||||||||||| | |||||||| ||||||||| |||||||| ||  ||||||||||||||||    
T  44338570 aaccaaattgaagaatcaaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaa-tgtgagaactctactcaccaaacaaccaa 44338472  T
Q  311 attgaagaatcaaaaggggagaagaaaccaaattgtaagaacacgcccaccaaacaacaataatgtgagaactcgattcacc 392  Q
    |||||||||||||||||||||||||||||||||||| || |||||| ||||||||||| | | ||||||||||||| |||||    
T  44338471 attgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaagtgtgagaactcgactcacc 44338390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 184 - 346
Target Start/End: Original strand, 15623046 - 15623210
Alignment:
Q  184 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg--gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat 281  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||  |||||||| ||||||||||||||| ||||||||||||||||||     
T  15623046 accaaatgtgagaactagactcaccaaacaaccaaattgaagaatcagtagggggagaagaaacaaaattgtgagcactcaactcaccaaacaaccaaa- 15623144  T
Q  282 tgtgagaagtcggctcaccaaacaaccaaattgaagaatc-aaaaggggagaagaaaccaaattgt 346  Q
    |||||||| | | |||||||||||||||||||||||||||   | ||||||||||||| |||||||    
T  15623145 tgtgagaactagactcaccaaacaaccaaattgaagaatcggtagggggagaagaaacaaaattgt 15623210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 157 - 346
Target Start/End: Original strand, 15623104 - 15623303
Alignment:
Q  157 agaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggga--agaaacc 246  Q
    |||||| ||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||| ||||||| | |||||||  ||||||     
T  15623104 agaaacaaaattgtgagcactcaactcaccaaacaaccaaatgtgagaactagactcaccaaacaaccaaattgaagaatcggtagggggagaagaaaca 15623203  T
Q  247 aaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatca-aaaggggagaagaaaccaaattg 345  Q
    ||||||||||||||| ||||||||||||| |||| |||||||| | | ||||||||||||||||||||||||| ||  | ||||||||||||||||||||    
T  15623204 aaattgtgagcactcaactcaccaaacaatcaaa-tgtgagaactagactcaccaaacaaccaaattgaagaaccagtacggggagaagaaaccaaattg 15623302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 191 - 313
Target Start/End: Complemental strand, 44338407 - 44338285
Alignment:
Q  191 gtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 289  Q
    ||||||||| |||||||||||| |||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||    
T  44338407 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaa 44338309  T
Q  290 gtcggctcaccaaacaaccaaatt 313  Q
     ||| |||||||||||| ||||||    
T  44338308 ctcgactcaccaaacaagcaaatt 44338285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 15623006 - 15623117
Alignment:
Q  235 ggggaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatca-aaaggggagaa 333  Q
    |||||||||||| ||| |||||||| |||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||  | ||||||||    
T  15623006 ggggaagaaaccgaatcgtgagcacacgactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaaccaaattgaagaatcagtagggggagaa 15623104  T
Q  334 gaaaccaaattgt 346  Q
    ||||| |||||||    
T  15623105 gaaacaaaattgt 15623117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 21814043 - 21813955
Alignment:
Q  12 atcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaa-ccaaaagggggagaagtgca 99  Q
    ||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||    
T  21814043 atcatcaaaagtgggagaagtgcaattagaacaatcaaaagggggagaaatacaatgaatcagaagaatcaaaaagggagagaagtgca 21813955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 15623197 - 15623306
Alignment:
Q  157 agaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaa--gggggaagaaacc 246  Q
    |||||| ||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||| ||||| ||| |  ||| |||||||||    
T  15623197 agaaacaaaattgtgagcactcaactcaccaaacaatcaaatgtgagaactagactcaccaaacaaccaaattgaagaaccagtacggggagaagaaacc 15623296  T
Q  247 aaattgtgag 256  Q
    ||||||||||    
T  15623297 aaattgtgag 15623306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 21813887 - 21813824
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaa 306  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | | | ||||||||||||    
T  21813887 aaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcacttgactcaccaaacaa 21813824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 46963815 - 46963889
Alignment:
Q  238 gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 313  Q
    ||||||||||||||||||||||  | ||||||||||||||||| |||||||| ||| |||||||||||| ||||||    
T  46963815 gaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaatt 46963889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 314
Target Start/End: Original strand, 11828573 - 11828649
Alignment:
Q  238 gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 314  Q
    ||||||||||||||||||| |||  |||||||||||||||||| |||||| |  || ||||||| ||||||||||||    
T  11828573 gaagaaaccaaattgtgagtacttaactcaccaaacaaccaaaatgtgagcacccgactcaccagacaaccaaattg 11828649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 46963681 - 46963737
Alignment:
Q  30 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaag 86  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||    
T  46963681 aatgcaatcagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaaaag 46963737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 46963508 - 46963600
Alignment:
Q  12 atcatcaaaagcgggagaaatgcaatcagaagaatcaaaa---gggggagaaatacaat-caatcagaagaaccaaaa-gggggagaagtgca 99  Q
    ||||||||||| ||||||| ||||||||||||||||||||   ||||||||| | |||| ||||| |||||| ||||| ||||||||||||||    
T  46963508 atcatcaaaagtgggagaagtgcaatcagaagaatcaaaaaaggggggagaagtgcaatgcaatcggaagaatcaaaaggggggagaagtgca 46963600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 392
Target Start/End: Original strand, 46963798 - 46963876
Alignment:
Q  314 gaagaatcaaaaggggagaagaaaccaaattgtaagaacacgcccaccaaacaacaataatgtgagaactcgattcacc 392  Q
    ||||||| ||||||||||||||||||||||||| || ||| || ||||||||||| | | |||||||| |||| |||||    
T  46963798 gaagaataaaaaggggagaagaaaccaaattgtgagcacatgctcaccaaacaaccaaagtgtgagaaatcgactcacc 46963876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 44338714 - 44338649
Alignment:
Q  34 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 99  Q
    |||||||||||||| | | ||||| || | |||||||||| ||||| |||||||||||||||||||    
T  44338714 caatcagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgca 44338649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 11828609 - 11828653
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||    
T  11828609 aaccaaaatgtgagcacccgactcaccagacaaccaaattgtgag 11828653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 24487088 - 24487128
Alignment:
Q  246 caaattgtgagcactcgactcaccaaacaaccaaattgtga 286  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  24487088 caaattgtgagaacttgactcaccaaacaaccaaattgtga 24487128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 311
Target Start/End: Complemental strand, 21813940 - 21813850
Alignment:
Q  223 aagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 311  Q
    |||||||| ||||||||  | ||||||||||||| | |||    ||||||| ||||||||||||||| | ||| |||||||||||||||||    
T  21813940 aagaatcaaaagggggagaaaaaaccaaattgtgggtacttatttcaccaagcaaccaaattgtgagcactcgactcaccaaacaaccaaa 21813850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 24486942 - 24486984
Alignment:
Q  45 atcaaaagggggagaaatacaatcaatcagaagaaccaaaagg 87  Q
    ||||||||||| |||| |||||||||||||||||| |||||||    
T  24486942 atcaaaaggggtagaagtacaatcaatcagaagaatcaaaagg 24486984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 11828640 - 11828684
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    |||||||||||||||||| ||| |||||||| | |||||||||||    
T  11828640 aaccaaattgtgagcacttgacccaccaaactaacaaattgtgag 11828684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 44338324 - 44338280
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    ||||||| |||||| |||||||||||||||||| |||||| ||||    
T  44338324 aaccaaaatgtgagaactcgactcaccaaacaagcaaattatgag 44338280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 157 - 392
Target Start/End: Complemental strand, 21862311 - 21862062
Alignment:
Q  157 agaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggg------aaga 242  Q
    |||||||||||||||||||||| | |||||||||        |||||| |||||||||||||||||||||||| ||||||||||||||||      | ||    
T  21862311 agaaaccaaattgtgagcactcgactcaccaaacaaccaaatgtgagagctagactcaccaaacaaccaaattgaagaatcagaagggggggggagagga 21862212  T
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaa-gaatcaaaaggggagaagaaaccaa 341  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||||| | | |||||||||||||||||||||| |||||||||||||||||||||||||    
T  21862211 aaccaaatattgagcactcgactcaccaaacaaccaaat-gtgagaactagactcaccaaacaaccaaattgaacgaatcaaaaggggagaagaaaccaa 21862113  T
Q  342 attgtaagaacacgcccaccaaacaacaataatgtgagaactcgattcacc 392  Q
    ||||| || |||||| || |||||||| | |||||||||| |||| |||||    
T  21862112 attgtgagcacacgctcaacaaacaaccaaaatgtgagaattcgactcacc 21862062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 194 - 392
Target Start/End: Complemental strand, 13167604 - 13167405
Alignment:
Q  194 agaactagactcaccaaacaaccaaattaaagaatcagaagggg--gaagaaaccaaattgtgagcactcgactcacc-aaacaaccaaattgtgagaag 290  Q
    |||||||||||||||||||||||||||| |||||||||||||||  |||||||||||| |||||||||||||||||||  |||||  ||| ||||||||     
T  13167604 agaactagactcaccaaacaaccaaattgaagaatcagaagggggagaagaaaccaaactgtgagcactcgactcaccggaacaatgaaa-tgtgagaat 13167506  T
Q  291 tcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagaacacgcccaccaaacaacaataatgtgagaactcgattca 390  Q
    |   ||||||| ||||||||||||||||| ||||||||||||||| |||||||||| || | |||| || |||||||||| | |||||||| |||| |||    
T  13167505 tttactcaccacacaaccaaattgaagaaccaaaaggggagaagacaccaaattgtgagcatacgctcagcaaacaacaa-agtgtgagaattcgactca 13167407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 191 - 329
Target Start/End: Complemental strand, 21862363 - 21862223
Alignment:
Q  191 gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggg---aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    ||||||| ||||||||||||||||||||||| |||||||| || ||||   |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21862363 gtgagaattagactcaccaaacaaccaaattgaagaatcaaaatgggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaa-tgtgag 21862265  T
Q  288 aagtcggctcaccaaacaaccaaattgaagaatcaaaagggg 329  Q
    |  | | |||||||||||||||||||||||||||| ||||||    
T  21862264 agctagactcaccaaacaaccaaattgaagaatcagaagggg 21862223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 184 - 301
Target Start/End: Original strand, 28063583 - 28063699
Alignment:
Q  184 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggggaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattg 283  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||  |||||||||||||||| |||||    
T  28063583 accaaatgtgagaactagactcaccaaacaaccaaattgaagaatcaaaagggagaagaaaccaaattgtgagcacctgactcaccaaacaacc-aattg 28063681  T
Q  284 tgagaagtcggctcacca 301  Q
    |||| | |||||||||||    
T  28063682 tgagcactcggctcacca 28063699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 184 - 314
Target Start/End: Complemental strand, 21862179 - 21862048
Alignment:
Q  184 accaaacgtgagaactagactcaccaaacaaccaaatt-aaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat 281  Q
    |||||| ||||||||||||||||||||||||||||||| || |||||| |||||| |||||||||||||||||||||| || |||| ||||||||||||     
T  21862179 accaaatgtgagaactagactcaccaaacaaccaaattgaacgaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaacaaacaaccaaaa 21862081  T
Q  282 tgtgagaagtcggctcaccaaacaaccaaattg 314  Q
    |||||||| ||| |||||||||||| |||||||    
T  21862080 tgtgagaattcgactcaccaaacaagcaaattg 21862048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 346
Target Start/End: Original strand, 28063518 - 28063652
Alignment:
Q  212 caaccaaattaaagaatcagaaggggg--aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaacca 309  Q
    ||||||| | ||||||||| |||||||  |||||| ||||||| ||| | || ||| ||||||||||||||| ||||||| | | |||||||||||||||    
T  28063518 caaccaactgaaagaatcaaaagggggtgaagaaatcaaattgggagaattcaacttaccaaacaaccaaat-gtgagaactagactcaccaaacaacca 28063616  T
Q  310 aattgaagaatcaaaaggggagaagaaaccaaattgt 346  Q
    |||||||||||||||| ||||||||||||||||||||    
T  28063617 aattgaagaatcaaaa-gggagaagaaaccaaattgt 28063652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 22860976 - 22860908
Alignment:
Q  30 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 99  Q
    |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  22860976 aatgcaatcagaagaaccaaaagggggagaaatgcaatcaatcggaagaaccaaaa-ggggagaagtgca 22860908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 9291085 - 9291228
Alignment:
Q  12 atcatcaaaagcgggagaaatgcaatcagaagaatc-aaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgc-----attaga 104  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||||||||| | |||| |||||| ||||| |||| | |||||||||||     || |||    
T  9291085 atcatcaaaagtgggagaagtgcaatcagaagaatcaaaaagggggagaagtgcaatgcaatcaaaagaatcaaaggagggagaagtgcaatcaatcaga 9291184  T
Q  105 agaaccaaaa-gggggagaagcgcaatcaattaaaagaaccaaa 147  Q
    |||||||||| |||||||||| ||||||||| | ||||| ||||    
T  9291185 agaaccaaaaggggggagaagtgcaatcaatcagaagaatcaaa 9291228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 346
Target Start/End: Complemental strand, 21862371 - 21862298
Alignment:
Q  275 accaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaa--ggggagaagaaaccaaattgt 346  Q
    |||||| |||||||| | | |||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  21862371 accaaagtgtgagaattagactcaccaaacaaccaaattgaagaatcaaaatgggggagaagaaaccaaattgt 21862298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 22861007 - 22860941
Alignment:
Q  34 caatcagaagaatcaaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgca 99  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  22861007 caatcagaagaaccaaaagggggagaaatgcaatgcaatcagaagaaccaaaagggggagaaatgca 22860941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 202 - 314
Target Start/End: Complemental strand, 13167502 - 13167391
Alignment:
Q  202 actcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcacc 300  Q
    |||||||| ||||||||||| ||||| || |||||| ||||| |||||||||||||||  || |||| |||||||| ||| |||||||| ||| ||||||    
T  13167502 actcaccacacaaccaaattgaagaaccaaaaggggagaagacaccaaattgtgagcatacg-ctcagcaaacaac-aaagtgtgagaattcgactcacc 13167405  T
Q  301 aaacaaccaaattg 314  Q
    |||||| |||||||    
T  13167404 aaacaagcaaattg 13167391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 22861008 - 22860917
Alignment:
Q  67 tcaatcagaagaaccaaaagggggagaagtgcatt------agaagaaccaaaagggggagaagcgcaatcaattaaaagaaccaaaagggg 152  Q
    |||||||||||||||||||||||||||| |||| |      ||||||||||||||||||||||  |||||||||   |||||||||||||||    
T  22861008 tcaatcagaagaaccaaaagggggagaaatgcaatgcaatcagaagaaccaaaagggggagaaatgcaatcaatcggaagaaccaaaagggg 22860917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 22860869 - 22860797
Alignment:
Q  30 aatgcaatcagaagaatcaaaagggggagaaa--tacaatcaatcagaagaaccaaaag-ggggagaagtgca 99  Q
    |||| ||||||||||||||||| ||||||| |  | ||||||||||||||||||||||| |||||||||||||    
T  22860869 aatggaatcagaagaatcaaaaaggggagagaagtgcaatcaatcagaagaaccaaaaggggggagaagtgca 22860797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 28063465 - 28063508
Alignment:
Q  12 atcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggg 55  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  28063465 atcatcaaaagtgggagaaatgcaatcagaaggatcaaaagggg 28063508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 10741569 - 10741529
Alignment:
Q  240 agaaaccaaattgtgagcactcgactcaccaaacaaccaaa 280  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  10741569 agaaaccaaattgtgagtactcgactcaccgaacaaccaaa 10741529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 13097970 - 13097903
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 310  Q
    |||||||||||||||||| | |||| ||||||| ||| ||||||| | ||| |||| |||||||||||    
T  13097970 aaccaaattgtgagcacttgtctcaacaaacaaacaatttgtgagcactcgactcatcaaacaaccaa 13097903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 22860829 - 22860762
Alignment:
Q  34 caatcagaagaatcaaaaggggg-agaaatacaat-caatcagaagaaccaaaagggggagaagtgca 99  Q
    |||||||||||| |||||||||| |||| | |||| |||||||||||| |||||||| ||||||||||    
T  22860829 caatcagaagaaccaaaaggggggagaagtgcaatgcaatcagaagaatcaaaagggagagaagtgca 22860762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 13097932 - 13097895
Alignment:
Q  250 ttgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  13097932 ttgtgagcactcgactcatcaaacaaccaatttgtgag 13097895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 21862088 - 21862044
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    ||||||| |||||| | |||||||||||||||| |||||||||||    
T  21862088 aaccaaaatgtgagaattcgactcaccaaacaagcaaattgtgag 21862044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 22861002 - 22860950
Alignment:
Q  102 agaagaaccaaaagggggagaagcgcaat-caattaaaagaaccaaaaggggg 153  Q
    ||||||||||||||||||||||  ||||| |||| | ||||||||||||||||    
T  22861002 agaagaaccaaaagggggagaaatgcaatgcaatcagaagaaccaaaaggggg 22860950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 28063715 - 28063777
Alignment:
Q  248 aattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaat 312  Q
    |||||||||||||| ||||| ||||||||||| ||||||| | ||| |||| |||||||||||||    
T  28063715 aattgtgagcactc-actcatcaaacaaccaa-ttgtgagcaatcgactcaacaaacaaccaaat 28063777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 15629796 - 15630107
Alignment:
Q  12 atcatcaaaagcgggagaaatgcaatcagaagaatcaaaa--gggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgcatt-----ag 103  Q
    |||||||||||  |||||| ||||||||||||||||||||  ||||||||| | |||| |||||| ||||| |||| | |||||||||||| |     |     
T  15629796 atcatcaaaagttggagaagtgcaatcagaagaatcaaaaaagggggagaagtgcaatgcaatcaaaagaatcaaaggagggagaagtgcaatcaatcaa 15629895  T
Q  104 aagaaccaaaagggggagaagcgcaat-caattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac--------gtga 194  Q
    |||||| |||||||||||||| ||||| |||| | ||||| || ||||||  | |||||||||||||||||||||| | |||||||||        ||||    
T  15629896 aagaacaaaaagggggagaagtgcaatgcaatcagaagaatcataaggggaga-agaaaccaaattgtgagcactcgactcaccaaacaaccaaatgtga 15629994  T
Q  195 gaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcg 293  Q
    ||| ||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||    
T  15629995 gaattagactcactaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcg 15630094  T
Q  294 gctcaccaaacaa 306  Q
     ||||||||||||    
T  15630095 actcaccaaacaa 15630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 223 - 392
Target Start/End: Original strand, 15629931 - 15630101
Alignment:
Q  223 aagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatc 321  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||||| |||||||||||||||||||||    
T  15629931 aagaatcataaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat-gtgagaattagactcactaaacaaccaaattgaagaatc 15630029  T
Q  322 aaaaggggagaagaaaccaaattgtaagaacacg-cccaccaaacaacaataatgtgagaactcgattcacc 392  Q
    ||||||||||||||||||||||||| || || || | ||||||||||| | | |||||| |||||| |||||    
T  15630030 aaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcacc 15630101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 19825091 - 19825157
Alignment:
Q  248 aattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 314  Q
    |||||||||||||  ||||||||||||||||||||||||| | ||| ||| ||||||||||||||||    
T  19825091 aattgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaaattg 19825157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 19825117 - 19825161
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  19825117 aaccaaattgtgagcactcgactcgccaaacaaccaaattgtgag 19825161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 3775072 - 3775188
Alignment:
Q  34 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaag---tgcattagaagaaccaaaagggggagaagcgcaat 130  Q
    ||||||||||||||||||| | |||||  |||||| |||||||||| ||||| |||||||||   |  || | ||||| ||||||| ||||||  |||||    
T  3775072 caatcagaagaatcaaaagagagagaa--acaatcgatcagaagaatcaaaatggggagaagcaatcaatcaaaagaatcaaaaggaggagaa--gcaat 3775167  T
Q  131 caattaaaagaaccaaaaggg 151  Q
    |||| ||||||| ||||||||    
T  3775168 caatcaaaagaatcaaaaggg 3775188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 12177164 - 12177227
Alignment:
Q  34 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtg 97  Q
    |||||| |||||||||||||   |||| | ||||||||||||| || |||||||||||||||||    
T  12177164 caatcataagaatcaaaaggaaaagaagtgcaatcaatcagaataatcaaaagggggagaagtg 12177227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 2072366 - 2072440
Alignment:
Q  240 agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 314  Q
    ||||||||||||||||| ||   |||||||||||||||||| | |||| | ||| |||| ||||||| |||||||    
T  2072366 agaaaccaaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcatcaaacaatcaaattg 2072440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 2075896 - 2075970
Alignment:
Q  240 agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 314  Q
    ||||||||||||||||| ||   |||||||||||||||||| | |||| | ||| |||  |||||||||||||||    
T  2075896 agaaaccaaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcgtcaaacaaccaaattg 2075970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 2072400 - 2072444
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    ||||||| | ||||||||||||||| ||||||| |||||||||||    
T  2072400 aaccaaagtatgagcactcgactcatcaaacaatcaaattgtgag 2072444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 2075930 - 2075974
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    ||||||| | ||||||||||||||  |||||||||||||||||||    
T  2075930 aaccaaagtatgagcactcgactcgtcaaacaaccaaattgtgag 2075974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 9168207 - 9168271
Alignment:
Q  36 atcagaagaatcaaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgca 99  Q
    |||||||||||||||||| |||||| | |||| |||| |||||||  ||||||||| ||||||||    
T  9168207 atcagaagaatcaaaaggaggagaagtgcaatgcaataagaagaatgaaaagggggggaagtgca 9168271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 15629930 - 15629962
Alignment:
Q  314 gaagaatcaaaaggggagaagaaaccaaattgt 346  Q
    ||||||||| |||||||||||||||||||||||    
T  15629930 gaagaatcataaggggagaagaaaccaaattgt 15629962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 9e-52; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 138 - 346
Target Start/End: Original strand, 1173283 - 1173501
Alignment:
Q  138 aagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatc 229  Q
    ||||| ||||||||||   |||||||||||||||||||||| | |||| ||||        ||||||||||||||||||||||||||||||| || ||||    
T  1173283 aagaatcaaaagggggagaagaaaccaaattgtgagcactcgactcactaaacaatcaaatgtgagaactagactcaccaaacaaccaaattgaataatc 1173382  T
Q  230 agaagggg--gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaagg 327  Q
    | ||||||  ||||||||||||||||| ||||| ||||||||||||||||||| |||||||| | | |||||||||||||||||||||||||||||||||    
T  1173383 aaaagggggagaagaaaccaaattgtgtgcactagactcaccaaacaaccaaa-tgtgagaattagactcaccaaacaaccaaattgaagaatcaaaagg 1173481  T
Q  328 g-gagaagaaaccaaattgt 346  Q
    | ||||||||||||||||||    
T  1173482 gcgagaagaaaccaaattgt 1173501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 287
Target Start/End: Original strand, 1173430 - 1173535
Alignment:
Q  184 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaat 281  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||| ||||| ||  ||||||||||||||||||||| |||||||||||||||||||     
T  1173430 accaaatgtgagaattagactcaccaaacaaccaaattgaagaatcaaaagggcgagaagaaaccaaattgtgagcactagactcaccaaacaaccaaag 1173529  T
Q  282 tgtgag 287  Q
    ||||||    
T  1173530 tgtgag 1173535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 32290863 - 32290742
Alignment:
Q  17 caaaagcgggagaaatgcaatcagaagaatcaaaagggg-gagaaatacaatcaatcagaagaaccaaaa-gggggagaagtgc------attagaagaa 108  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| | |||||||||||      || |||||||    
T  32290863 caaaagtgggagaagtgcaatcagaagaatcaaaaggggagagaaatgcaatcaatcagaagaactaaaatgagggagaagtgcaatacaatcagaagaa 32290764  T
Q  109 ccaaaagggggagaagcgcaat 130  Q
    |||||||||||||||| |||||    
T  32290763 ccaaaagggggagaagtgcaat 32290742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 38583967 - 38584033
Alignment:
Q  34 caatcagaagaatcaaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgca 99  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||| |||||||||||||||||||    
T  38583967 caatcagaagaatcaaaagggcgagaaatgcaatgcaatcagaagaatcaaaagggggagaagtgca 38584033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 8986287 - 8986214
Alignment:
Q  239 aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 313  Q
    |||||||||||||||||||||  | ||||||||||||||||| |||||||| ||| |||||||||||| ||||||    
T  8986287 aagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaatt 8986214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 8986594 - 8986502
Alignment:
Q  12 atcatcaaaagcgggagaaatgcaatcagaagaatcaaaa---gggggagaaatacaat-caatcagaagaaccaaaa-gggggagaagtgca 99  Q
    ||||||||||| ||||||| ||||||||||||||||||||   ||||||||| | |||| |||||||||||| ||||| ||||||||||||||    
T  8986594 atcatcaaaagtgggagaagtgcaatcagaagaatcaaaaaaggggggagaagtgcaatgcaatcagaagaatcaaaaggggggagaagtgca 8986502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 38583998 - 38584102
Alignment:
Q  30 aatgcaatcagaagaatcaaaagggggagaa-----atacaatcaatcagaagaaccaaaagggggagaagtgc------attagaagaaccaaaagggg 118  Q
    |||||||||||||||||||||||||||||||     || |||||| |||||| || ||||||||||||||||||      |||||||||| |||||||||    
T  38583998 aatgcaatcagaagaatcaaaagggggagaagtgcaatgcaatcactcagaaaaatcaaaagggggagaagtgcgatgcaattagaagaatcaaaagggg 38584097  T
Q  119 gagaa 123  Q
    |||||    
T  38584098 gagaa 38584102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 8986424 - 8986368
Alignment:
Q  30 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaag 86  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||    
T  8986424 aatgcaatcagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaaaag 8986368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 38583934 - 38584035
Alignment:
Q  34 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgc------attagaagaaccaaaagggggagaagcgc 127  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||| |||||||| ||||| |||      || ||||||| ||||||||||||||| ||    
T  38583934 caatcagaagaatcaaa-gggggagaagtgcaatcaatcagaagaatcaaaagggcgagaaatgcaatgcaatcagaagaatcaaaagggggagaagtgc 38584032  T
Q  128 aat 130  Q
    |||    
T  38584033 aat 38584035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 38584202 - 38584246
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||    
T  38584202 aaccaaaatgtgagcactcgactcaccaaacaagcaaattgtgag 38584246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 1173560 - 1173622
Alignment:
Q  251 tgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 313  Q
    |||||||||| ||||||||||||||||||| | |||| | ||| |||||||||||| ||||||    
T  1173560 tgtgagcactagactcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaatt 1173622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 32290775 - 32290709
Alignment:
Q  34 caatcagaagaatcaaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgca 99  Q
    |||||||||||| |||||||||||||| | |||| |||||||||| |||||||  ||||||||||||    
T  32290775 caatcagaagaaccaaaagggggagaagtgcaatgcaatcagaaggaccaaaaatgggagaagtgca 32290709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 38584083 - 38584176
Alignment:
Q  223 aagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 314  Q
    |||||||| ||||||||  | ||| ||||||||||||| |  ||||||||||||||||||||||||| | |   |||||||||| |||||||||    
T  38584083 aagaatcaaaagggggagaaaaaatcaaattgtgagcatttaactcaccaaacaaccaaattgtgagcacttaactcaccaaactaccaaattg 38584176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 38584168 - 38584242
Alignment:
Q  244 accaaattgtgagcactcgactcacca----aacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 314  Q
    ||||||||||||||||| |||||||||    |||||||||| |||||| | ||| |||||||||||| |||||||    
T  38584168 accaaattgtgagcacttgactcaccaaccaaacaaccaaaatgtgagcactcgactcaccaaacaagcaaattg 38584242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 38584136 - 38584180
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||    
T  38584136 aaccaaattgtgagcacttaactcaccaaactaccaaattgtgag 38584180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 1173583 - 1173653
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 313  Q
    ||||||| | |||| |||||||||||||||||| |||||| |||| | ||| | |||||||||| ||||||    
T  1173583 aaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccaccaaacaaacaaatt 1173653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 32290598 - 32290558
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattg 283  Q
    |||||||||||||||||| ||| |||||||||| |||||||    
T  32290598 aaccaaattgtgagcacttgacccaccaaacaaacaaattg 32290558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 184 - 314
Target Start/End: Original strand, 46692006 - 46692137
Alignment:
Q  184 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaat 281  Q
    |||||| |||||||||||||||||||||| |||||||| |||||||| ||||| ||  ||||||||||||||||||||||||||||||||||||| |||     
T  46692006 accaaatgtgagaactagactcaccaaaccaccaaattgaagaatcaaaagggagagaagaaaccaaattgtgagcactcgactcaccaaacaactaaa- 46692104  T
Q  282 tgtgagaagtcggctcaccaaacaaccaaattg 314  Q
    |||||||| | | ||||||||||||||||||||    
T  46692105 tgtgagaattagactcaccaaacaaccaaattg 46692137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 223 - 336
Target Start/End: Complemental strand, 42530824 - 42530711
Alignment:
Q  223 aagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatc 321  Q
    |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||    
T  42530824 aagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaaattaaagaatc 42530726  T
Q  322 aaaaggggagaagaa 336  Q
    |||| ||||||||||    
T  42530725 aaaaagggagaagaa 42530711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 238 - 346
Target Start/End: Original strand, 46691968 - 46692077
Alignment:
Q  238 gaagaaaccaaattgtgagcactcgactcacc-aaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggg-gagaaga 335  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||||||| | | |||||||||| ||||||||||||||||||||||| |||||||    
T  46691968 gaagaaaccaaattgtgaacactcgactcaccaaaacaaccaaa-tgtgagaactagactcaccaaaccaccaaattgaagaatcaaaagggagagaaga 46692066  T
Q  336 aaccaaattgt 346  Q
    |||||||||||    
T  46692067 aaccaaattgt 46692077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 314 - 392
Target Start/End: Complemental strand, 42530825 - 42530747
Alignment:
Q  314 gaagaatcaaaaggggagaagaaaccaaattgtaagaacacgcccaccaaacaacaataatgtgagaactcgattcacc 392  Q
    ||||||||||||||||||||||||||||||||| || |||||| ||||||||||| | | ||||||||||||| |||||    
T  42530825 gaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaagtgtgagaactcgactcacc 42530747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 42530947 - 42530725
Alignment:
Q  30 aatgcaatcagaagaatcaaaaggggg-agaaatacaatcaatcagaagaaccaaaagggggagaag---------tgc-----attagaagaaccaaaa 114  Q
    ||||||||| ||| ||||||||||||| |||| | ||||||||||||||||||||||| ||||||||         |||     || ||||||| |||||    
T  42530947 aatgcaatctgaataatcaaaaggggggagaagtgcaatcaatcagaagaaccaaaagagggagaagtaagtgaaatgcaatcaatcagaagaatcaaaa 42530848  T
Q  115 gggggagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac---------gtgagaactagactc 205  Q
    |||| ||||| ||||||||| | ||||| |||||||||  | |||||||||||||||||||| |   |||||||||         ||||||||| |||||    
T  42530847 ggggaagaagtgcaatcaatcagaagaatcaaaaggggaga-agaaaccaaattgtgagcacac-gctcaccaaacaaccaaagtgtgagaactcgactc 42530750  T
Q  206 accaaacaaccaaattaaagaatca 230  Q
    |||||||||||||||||||||||||    
T  42530749 accaaacaaccaaattaaagaatca 42530725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 50295950 - 50295902
Alignment:
Q  12 atcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaa 60  Q
    ||||||||||| ||||||| ||||||||||||||||||||| |||||||    
T  50295950 atcatcaaaagtgggagaagtgcaatcagaagaatcaaaagagggagaa 50295902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 42531042 - 42530947
Alignment:
Q  12 atcatcaaaagcgggagaaatgcaatcagaagaatcaaaag-------ggggagaaatacaatcaatcagaagaaccaaaag-ggggagaagtgca 99  Q
    ||||| ||||| ||||||| |||||||||||||||||||||       |||| ||||| |||||||||||||||||| |||| || ||||||||||    
T  42531042 atcattaaaagtgggagaagtgcaatcagaagaatcaaaagggggggtggggggaaatgcaatcaatcagaagaaccgaaagcggagagaagtgca 42530947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 46691887 - 46691955
Alignment:
Q  12 atcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaaatacaat-caatcagaagaa 79  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||| | || | |||| ||||||||||||    
T  46691887 atcatcaaaagtgggagaagtgcaatcagaagaattaaaaggggaaaaagtgcaatgcaatcagaagaa 46691955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 50295586 - 50295550
Alignment:
Q  251 tgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    |||||||||||||||||| ||||||||||||||||||    
T  50295586 tgtgagcactcgactcacgaaacaaccaaattgtgag 50295550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 50295610 - 50295554
Alignment:
Q  258 actcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 314  Q
    |||| ||||||||||||||| || |||||| | ||| ||||| ||||||||||||||    
T  50295610 actcaactcaccaaacaacccaagtgtgagcactcgactcacgaaacaaccaaattg 50295554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 238 - 392
Target Start/End: Complemental strand, 16870820 - 16870665
Alignment:
Q  238 gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaat--caaaaggggagaaga 335  Q
    |||||||||||||| |||||||||||||||| |||||||||||| || |||| | | ||||| || |||||||||||||||||  |||||||||||||||    
T  16870820 gaagaaaccaaattatgagcactcgactcacgaaacaaccaaat-gtaagaacttgactcactaatcaaccaaattgaagaatatcaaaaggggagaaga 16870722  T
Q  336 aaccaaattgtaagaacacgcccaccaaacaacaataatgtgagaactcgattcacc 392  Q
    ||||||||||| || ||| || ||||||||||| | | |||||||| |||| |||||    
T  16870721 aaccaaattgtgagcacatgctcaccaaacaaccaaagtgtgagaaatcgactcacc 16870665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 30 - 313
Target Start/End: Complemental strand, 16870955 - 16870652
Alignment:
Q  30 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagg-gggagaagtgcatta----------gaagaaccaaaagggg 118  Q
    |||||||||||||||| ||| ||| |||||||| |||||||||||||||| ||||||  ||||||||| || |           |||||||||| |||||    
T  16870955 aatgcaatcagaagaaccaataggtggagaaatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatcggaagaaccaacagggg 16870856  T
Q  119 gagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaa 210  Q
     ||||| ||||||||| | |||||  |||| ||||   |||||||||||| ||||||||| | |||| ||||        || |||||| ||||||| ||    
T  16870855 -agaagtgcaatcaatgagaagaataaaaaaggggagaagaaaccaaattatgagcactcgactcacgaaacaaccaaatgtaagaacttgactcactaa 16870757  T
Q  211 acaaccaaattaaagaat--cagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaac 307  Q
     |||||||||| ||||||  || |||||| ||||||||||||||||||||||  | ||||||||||||||||| |||||||| ||| ||||||||||||     
T  16870756 tcaaccaaattgaagaatatcaaaaggggagaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaag 16870658  T
Q  308 caaatt 313  Q
    ||||||    
T  16870657 caaatt 16870652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 54147905 - 54147835
Alignment:
Q  274 aaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaatt 344  Q
    |||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54147905 aaccaaattgtgagcactcgactcaccaaacaaccaacttgaagaatcaaaaggggagaagaaaccaaatt 54147835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 54147896 - 54147811
Alignment:
Q  191 gtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaa 275  Q
    ||||| ||| |||||||||||||||||| || |||||||| |||||| |||||||||||||| |||||||||||| ||||||||||    
T  54147896 gtgagcactcgactcaccaaacaaccaacttgaagaatcaaaaggggagaagaaaccaaattatgagcactcgacccaccaaacaa 54147811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 54147802 - 54147717
Alignment:
Q  223 aagaatcagaagggggaa-gaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaac 307  Q
    |||||||| ||||||||| |||||||||||||||||||   |||||||||||||||||| |||||||| | | |||||||||||||    
T  54147802 aagaatcaaaagggggaaagaaaccaaattgtgagcaccaaactcaccaaacaaccaaaatgtgagaactagactcaccaaacaac 54147717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 54147926 - 54147869
Alignment:
Q  223 aagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaa 279  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54147926 aagaatcaaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaa 54147869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 42265492 - 42265426
Alignment:
Q  244 accaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 311  Q
    ||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||||||||||||    
T  42265492 accaaattgtgagcacttgaatcaccaaacaaccaaattgtgag-actcgactcaccaaacaaccaaa 42265426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 24225742 - 24225681
Alignment:
Q  38 cagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 99  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||| || | |||||||    
T  24225742 cagaagaatcaaaagggggagaaatgcaatcaatcagaagaatcaaaagaggaaaaagtgca 24225681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 16871172 - 16871105
Alignment:
Q  34 caatcagaagaatcaaaa--gggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 99  Q
    |||||||| |||||||||  ||||||||| | ||||||||||||||||||||||| ||||||||||||    
T  16871172 caatcagacgaatcaaaaaagggggagaagtgcaatcaatcagaagaaccaaaagtgggagaagtgca 16871105  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 16871105 - 16871033
Alignment:
Q  30 aatgcaatcagaagaatcaaaag-ggggagaaatacaat-caatcagaagaaccaaaa-gggggagaagtgca 99  Q
    ||||||||||||||||||||||| |||||||| | |||| |||||||||||| ||||| ||||||||||||||    
T  16871105 aatgcaatcagaagaatcaaaaggggggagaagtgcaatgcaatcagaagaatcaaaaggggggagaagtgca 16871033  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 24225546 - 24225502
Alignment:
Q  243 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  24225546 aaccaaattgtaagcactcgattcaccaaacaaccaaattgtgag 24225502  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 24225735 - 24225647
Alignment:
Q  15 atcaaaagcgggagaaatgcaatca----gaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 99  Q
    |||||||| ||||||||||||||||    ||||||||||||| || | || | |||| ||||||||||| ||||| |||||||||||||    
T  24225735 atcaaaagggggagaaatgcaatcaatcagaagaatcaaaagaggaaaaagtgcaatgaatcagaagaatcaaaaaggggagaagtgca 24225647  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 54147955 - 54147912
Alignment:
Q  12 atcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggg 55  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  54147955 atcatcaaaagtgggagaagtgcaatcagaagaatcaaaagggg 54147912  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 54147927 - 54147895
Alignment:
Q  314 gaagaatcaaaaggggagaagaaaccaaattgt 346  Q
    |||||||||||||||||||||||||||||||||    
T  54147927 gaagaatcaaaaggggagaagaaaccaaattgt 54147895  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 54147843 - 54147724
Alignment:
Q  274 aaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaag-aacacgcccaccaaacaacaata 372  Q
    ||||||||| |||| | ||| | |||||||||| |||   ||||||||||||||||  ||||||||||||||| || | ||  | ||||||||||| | |    
T  54147843 aaccaaattatgagcactcgacccaccaaacaatcaatcagaagaatcaaaagggggaaagaaaccaaattgtgagcaccaaactcaccaaacaaccaaa 54147744  T
Q  373 atgtgagaactcgattcacc 392  Q
    ||||||||||| || |||||    
T  54147743 atgtgagaactagactcacc 54147724  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 16871318 - 16871262
Alignment:
Q  12 atcatcaaaagcgggagaaatgcaatcagaagaatc-aaaagggggagaaatacaat 67  Q
    ||||||||||| ||||||| |||||| ||||||||| |||| |||||||| ||||||    
T  16871318 atcatcaaaagtgggagaagtgcaattagaagaatcaaaaaaggggagaagtacaat 16871262  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 24225677 - 24225633
Alignment:
Q  35 aatcagaagaatcaaaagggggagaaatacaatcaatcagaagaa 79  Q
    ||||||||||||||||| |||||||| | |||| |||||||||||    
T  24225677 aatcagaagaatcaaaaaggggagaagtgcaatgaatcagaagaa 24225633  T

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Target: scaffold0499 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 7304 - 7341
Alignment:
Q  250 ttgtgagcactcgactcaccaaacaaccaaattgtgag 287  Q
    |||||||||||||||||||||||||||||| |||||||    
T  7304 ttgtgagcactcgactcaccaaacaaccaatttgtgag 7341  T

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Target: scaffold0499; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 7265 - 7333
Alignment:
Q  242 aaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 310  Q
    |||| |||||||||||| | | |||| ||||||| ||| ||||||| | ||| ||||||||||||||||    
T  7265 aaactaaattgtgagcatttgtctcaacaaacaatcaatttgtgagcactcgactcaccaaacaaccaa 7333  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 289
Target Start/End: Original strand, 154938 - 154968
Alignment:
Q  259 ctcgactcaccaaacaaccaaattgtgagaa 289  Q
    |||||||||||||||||||||||||||||||    
T  154938 ctcgactcaccaaacaaccaaattgtgagaa 154968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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