View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1741_low_9 (Length: 372)
Name: NF1741_low_9
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1741_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 36891067 - 36890725
Alignment:
| Q |
17 |
atatagtacatttttatatgtcataatataaatgttacataattctccaacacatgtatatgtacttacagtggtataggattcgcttataccatgaaag |
116 |
Q |
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| T |
36891067 |
atatagtacatttttatatgtcataatataaatgttacataattctccaacacatgtatatgtacttacagtggtataggattcgcttataccatgaaag |
36890968 |
T |
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| Q |
117 |
gttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattcttctttgttcagatgtgtgcttaggaaatcatagtaatgt |
216 |
Q |
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| T |
36890967 |
gttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattcttctttgttcagatgtgtgcttaggaaatcatagtaatgt |
36890868 |
T |
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| Q |
217 |
actactatcacagccaaatctgtttcatcagataacacatatgtataaccaattatagaaca--atatgtcaatatctgtttctaccnnnnnnncagaag |
314 |
Q |
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| T |
36890867 |
actactatcacagccaaatctgtttcatcacataacacatatgtataaccaattatagcacaatatatgtcaatatctgtttctacctaaaaaacagaag |
36890768 |
T |
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| Q |
315 |
t-aaatatatgtgtcatccaaaaaagctagcagcgcagcttgt |
356 |
Q |
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| T |
36890767 |
taaaatatatgtgtcatccgaaaaagctagcggcgcagcttgt |
36890725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 36877939 - 36877777
Alignment:
| Q |
78 |
gtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattct |
177 |
Q |
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| T |
36877939 |
gtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagctgcaaggactttgagaggagttgatcct |
36877840 |
T |
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| Q |
178 |
tctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtt |
240 |
Q |
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| T |
36877839 |
tctttgttcagatgtgtgctgaggtaatcatattgatgtactattatcacagccaaatctgtt |
36877777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 36897705 - 36897546
Alignment:
| Q |
79 |
tacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattctt |
178 |
Q |
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||||||| || |||||||||||| |||||||||| ||| |||| | ||||||||| |||||||| || | ||||||| | |||||||| ||| | | |
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| T |
36897705 |
tacttactgtagtataggattcgtttataccatggtaggctgctagaacttttgaaagctgaaggcttattagcaaggagatacagaggagtggatacct |
36897606 |
T |
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| Q |
179 |
ctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctg |
238 |
Q |
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||| |||| |||||||||| |||||| ||||||||| | ||| ||||||||| ||||||| |
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| T |
36897605 |
cttcgttctgatgtgtgctaaggaaagcatagtaatttgctattatcacagctaaatctg |
36897546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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