View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1742-Insertion-1 (Length: 462)
Name: NF1742-Insertion-1
Description: NF1742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1742-Insertion-1 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 6e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 303 - 462
Target Start/End: Complemental strand, 42301251 - 42301089
Alignment:
| Q |
303 |
tagttgttttgttgataaatttggttgaaggaggaacctcgttgttaagcgaagaccttgagtttgctatgctgaattcaaatttgacatataaatcaga |
402 |
Q |
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| T |
42301251 |
tagttgttttgttgataaatttggttgaaggaggaaccttgttgttaagcgaagaccttgagtttgctatgttgaattcaaatttgacatataaatcaga |
42301152 |
T |
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| Q |
403 |
ttacctcagta---ataacataatcctttcttttaatggcttatccagtgttttcatatttga |
462 |
Q |
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| T |
42301151 |
ttacctcagtaataataacataatcttttcttttaatggcttatccggtgttttcatatttga |
42301089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 294 - 458
Target Start/End: Complemental strand, 42295437 - 42295274
Alignment:
| Q |
294 |
tgtctgcagtagttgttttgttgataaatttggttgaaggaggaacctcgttgttaagcgaagaccttgagtttgctatgctgaattcaaatttgacata |
393 |
Q |
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| T |
42295437 |
tgtctgcagtagttgttttgttgataaatttggttgaag-aggaaccttgttgttaagggaaaaccttgagtttgttatgttgaattcaaaattgacata |
42295339 |
T |
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| Q |
394 |
taaatcagattacctcagtaataacataatcctttcttttaatggcttatccagtgttttcatat |
458 |
Q |
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| T |
42295338 |
taaatccgattacctcagtaataacataatcttttctgtcaatggcatatccggtgttttcatat |
42295274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 42295543 - 42295476
Alignment:
| Q |
183 |
atccaagttgaaaatgaattgtat-attgttaagcatagaagtttatattatcattacatgttgatgt |
249 |
Q |
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| T |
42295543 |
atccaagttgaagatgaattgtattattgttaagcatagaagtttatattatcattagatgttgatgt |
42295476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 42295796 - 42295730
Alignment:
| Q |
13 |
aatccataaaaagatcaagtgagtttgggatcggaaattagagatatcaagtacttgcaaccagaact |
80 |
Q |
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| T |
42295796 |
aatccatgaaaagatcaagtgagtttgggatcagaaattagagatatcaa-tacttgcaactagaact |
42295730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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