View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1742-Insertion-2 (Length: 846)
Name: NF1742-Insertion-2
Description: NF1742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1742-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 34 - 392
Target Start/End: Complemental strand, 44480760 - 44480402
Alignment:
| Q |
34 |
gaaatagataacataattatttcgttactcagtttctttnnnnnnnttgaaattatatatttaaaaaactataaaggaagtggacttctaacccgaggta |
133 |
Q |
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| T |
44480760 |
gaaatatataacataattattttgttactcagtttcttttaaaaaattgaaattatatatttaaaaaactataaaggaagtggacttctaacccgaggta |
44480661 |
T |
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| Q |
134 |
tttcgtggctaagagctgtcactggaatttgtcnnnnnnnggatttgttagagtgtaacaattaaattgtattttctagtttagtgttgatagtaaaata |
233 |
Q |
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| T |
44480660 |
tttcgtggctaagagctgtcactggaatttgtcaaaaaaaggatttgttagagtgtaacaattaaattgtattttctagtttagtgttgatagtaaaata |
44480561 |
T |
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| Q |
234 |
actgcaactgtttaaaaaatttctaacacacgttatatcacatttatatttaattaggaaattatcctactagggtagggtgcaaaaactttgaccgaaa |
333 |
Q |
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| T |
44480560 |
actgcaactgtttaaaaattttctaacacacgttatatcacatttatatttaattaggaaattatcctactagggtagggtgcaaaaactttgaccgaaa |
44480461 |
T |
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| Q |
334 |
ttatgcttctccttgttggcaaatattgcattgcagtcctgagttccttaatatatact |
392 |
Q |
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| T |
44480460 |
ttatgcttctccttgttggcaaatatggcagtgcagtcctgagttctttaatatatact |
44480402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 538 - 846
Target Start/End: Complemental strand, 44479726 - 44479417
Alignment:
| Q |
538 |
aattcacataccacgaggtatttgaaagaccaaaagctgtcacagaggatttggtcaatatacacaatgcatgcaattgggggttggagtttatagcgag |
637 |
Q |
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| T |
44479726 |
aattcacataccacgaggtatttgaaagaccaaaagctgtcacagaggatttggtcaatatacacaatgcatgcaattgggggttggagtttatagcgag |
44479627 |
T |
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| Q |
638 |
tttataggcaatattgtcagtaacaaaataaacagtgttttataattactagtggttcttttacacatggttagagagatttttaataattcagtaaata |
737 |
Q |
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| T |
44479626 |
tttataggcaatactgtcggtaacaaaataaacagtgttttctaattactagtggttcttttacacatggttagagagatttttaataattcagtaaata |
44479527 |
T |
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| Q |
738 |
atgatataagtgaaggtagtttttatattttttattca-ccatactgactaactgaagaatcccatgttatc-atgttgacaatttgaatgcaaattgca |
835 |
Q |
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| T |
44479526 |
atgatataagtgaaggtagtttttatattttt-attcaaccatactgactaacttaagaatcccatgttatcaatgttgacaatttgaatgcaaattgca |
44479428 |
T |
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| Q |
836 |
gttaatctata |
846 |
Q |
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| T |
44479427 |
gttaatctata |
44479417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 392 - 540
Target Start/End: Complemental strand, 44480129 - 44479981
Alignment:
| Q |
392 |
tagtatttggagagttttctaataaactttcttgactgaacaaccaaactgcattactctttgtcgcttttttacccttctggatcacgtattatatgtg |
491 |
Q |
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| T |
44480129 |
tagtatttgaagagttttctaataaactttcttgactgaacaaccaaactgcattactctttgtcgcttttttacccttctggatcacgtattatatgtg |
44480030 |
T |
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| Q |
492 |
tatagttgcaagaattgttcaatttatagctagaagactttactacaat |
540 |
Q |
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| T |
44480029 |
tatagttgcaagaattgttcaatttatagctagaagactttactacaat |
44479981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 548 - 638
Target Start/End: Original strand, 7707016 - 7707106
Alignment:
| Q |
548 |
ccacgaggtatttgaaagaccaaaagctgtcacagaggatttggtcaatatacacaatgcatgcaattgggggttggagtttatagcgagt |
638 |
Q |
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| T |
7707016 |
ccacgaggtatttggaagaccaaatgttgtcttaagggatttggtcaaaatacacaatgcatgcaattggtggttggagtttatagtgagt |
7707106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 721
Target Start/End: Original strand, 7707162 - 7707211
Alignment:
| Q |
672 |
gtgttttataattactagtggttcttttacacatggttagagagattttt |
721 |
Q |
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| T |
7707162 |
gtgttttctaattactagtggttcttctacatatggtttgcgagattttt |
7707211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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