View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1742-Insertion-3 (Length: 675)

Name: NF1742-Insertion-3
Description: NF1742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1742-Insertion-3
NF1742-Insertion-3
[»] chr4 (6 HSPs)
chr4 (8-624)||(41133698-41134320)
chr4 (640-675)||(41133668-41133703)
chr4 (436-500)||(27755738-27755802)
chr4 (439-500)||(36523147-36523208)
chr4 (436-500)||(5428597-5428661)
chr4 (436-500)||(39307715-39307779)
[»] chr1 (3 HSPs)
chr1 (436-500)||(28030860-28030924)
chr1 (436-500)||(6402589-6402653)
chr1 (436-500)||(38153456-38153520)
[»] chr2 (1 HSPs)
chr2 (436-500)||(7799866-7799930)
[»] chr5 (2 HSPs)
chr5 (436-494)||(12007817-12007875)
chr5 (436-500)||(39776649-39776713)
[»] chr7 (2 HSPs)
chr7 (436-500)||(36341639-36341703)
chr7 (436-500)||(41898007-41898071)


Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 8 - 624
Target Start/End: Complemental strand, 41134320 - 41133698
Alignment:
Q  8 aaacagtctcaatttaccgagtcttttggaaaacactgccgtcgtcttgttatcatttggggggtaatgggtcaagagaaaaagtaagattgggttaact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||    
T  41134320 aaacagtctcaatttaccgagtcttttggaaaacactgccgtcgtcttgttatcat------------gggtcaagagaaaaagtaagattgggttaact 41134233  T
Q  108 taacaaagatgtgtttggaatgatcttttaacttatttttctgccacataacaaccttatttattactgttatctccaagtgactacccatgattccttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41134232 taacaaagatgtgtttggaatgatcttttaacttatttttctgccacataacaaccttatttattactgttatctccaagtgactacccatgattccttc 41134133  T
Q  208 ggctgcttactctcactgcatataatataaagacaacaataatgaatgtctctatctcaattcaattctacaaaatcagagttttgtcgtcaaaagaaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41134132 ggctgcttactctcactgcatataatataaagacaacaataatgaatgtctctatctcaattcaattctacaaaatcagagttttgtcgtcaaaagaaaa 41134033  T
Q  308 ttggtgctcatttttctatatttaagtttaa-----acaatttttctttgtcacccgattaaatcccaaaagatataaaatattggacagtatttgttga 402  Q
    |||||||||||||||||||||||||||||||     |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  41134032 ttggtgctcatttttctatatttaagtttaatttagacaatttttctttgtcccccgattaaatcccaaaagatataaaatattggacagtatttgttca 41133933  T
Q  403 ctttctttacacctttcaaattatatacttccttacatgtcgcatttttgtaacgtacactatttacatgacttattttgatcatactttttt--acta- 499  Q
    ||||||||||||||||||||||| |||| || |||||| ||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||  ||||     
T  41133932 ctttctttacacctttcaaattacatacatctttacatatcgcatttttgtaacgtgcactattcacatgacttactttgttcatactttttttaactaa 41133833  T
Q  500 ------aatg----ttatgtatagcaaaacatatatcatgaaaccttccctaaacatgtatttcaattacatgccatgttttctacccgataatatagtt 589  Q
          ||||     ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41133832 caaagtaatgctatatatgtatagcaaaacatatctcatgaaaccttccctaaacatgtatttcaattacatgccatgttttttacccgataatatagtt 41133733  T
Q  590 ctctttatcattcaactatgtgttgcgtttcattt 624  Q
    |||||||||| ||||||||||||||||||||||||    
T  41133732 ctctttatcagtcaactatgtgttgcgtttcattt 41133698  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 640 - 675
Target Start/End: Complemental strand, 41133703 - 41133668
Alignment:
Q  640 tcatttattttctacttccgtatgtattgcgtttca 675  Q
    ||||||||||||||||||||||||||||||||||||    
T  41133703 tcatttattttctacttccgtatgtattgcgtttca 41133668  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 27755738 - 27755802
Alignment:
Q  436 tacatgtcgcatttttgtaacgtacactatttacatgacttattttgatcatacttttttactaa 500  Q
    |||||||||||||||||||| ||||| | || | || ||||||||||| |||||||||| |||||    
T  27755738 tacatgtcgcatttttgtaatgtacattgttcatataacttattttgaccatactttttaactaa 27755802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 500
Target Start/End: Complemental strand, 36523208 - 36523147
Alignment:
Q  439 atgtcgcatttttgtaacgtacactatttacatgacttattttgatcatacttttttactaa 500  Q
    |||||||||||||| ||  | |||||||||||||||||| |||||  ||||||||| |||||    
T  36523208 atgtcgcatttttgcaatatgcactatttacatgacttactttgactatactttttaactaa 36523147  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 5428597 - 5428661
Alignment:
Q  436 tacatgtcgcatttttgtaacgtacactatttacatgacttattttgatcatacttttttactaa 500  Q
    ||||||||||||||| | || || ||||||| ||||||||||  |||| |||||||||| |||||    
T  5428597 tacatgtcgcattttggcaatgtgcactattcacatgacttacgttgaccatactttttaactaa 5428661  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 39307715 - 39307779
Alignment:
Q  436 tacatgtcgcatttttgtaacgtacactatttacatgacttattttgatcatacttttttactaa 500  Q
    ||||||||||||||||| ||  ||| ||||| |||||||||| ||||||  |||||||| |||||    
T  39307715 tacatgtcgcatttttgcaatataccctattcacatgacttactttgatgctactttttaactaa 39307779  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 500
Target Start/End: Complemental strand, 28030924 - 28030860
Alignment:
Q  436 tacatgtcgcatttttgtaacgtacactatttacatgacttattttgatcatacttttttactaa 500  Q
    ||||||| ||||||||| || || || ||||||||||||||||||||| |||||||||| |||||    
T  28030924 tacatgttgcatttttgcaatgtgcattatttacatgacttattttgaccatactttttaactaa 28030860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 500
Target Start/End: Complemental strand, 6402653 - 6402589
Alignment:
Q  436 tacatgtcgcatttttgtaacgtacactatttacatgacttattttgatcatacttttttactaa 500  Q
    ||||||||  ||||||| || || ||||||| || ||||||||||||| |||||||||| |||||    
T  6402653 tacatgtccaatttttgcaatgtgcactattcacttgacttattttgaccatactttttaactaa 6402589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 500
Target Start/End: Complemental strand, 38153520 - 38153456
Alignment:
Q  436 tacatgtcgcatttttgtaacgtacactatttacatgacttattttgatcatacttttttactaa 500  Q
    |||||||||||||||| ||| || ||||||| |||||||||| | | | |||||||||| |||||    
T  38153520 tacatgtcgcatttttataatgtgcactattcacatgacttactgttaccatactttttaactaa 38153456  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 7799866 - 7799930
Alignment:
Q  436 tacatgtcgcatttttgtaacgtacactatttacatgacttattttgatcatacttttttactaa 500  Q
    ||||||||||||||||| || || ||||||| |||||||||| ||||| | |||||||| |||||    
T  7799866 tacatgtcgcatttttgcaatgtgcactattcacatgacttactttgaccctactttttaactaa 7799930  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 494
Target Start/End: Complemental strand, 12007875 - 12007817
Alignment:
Q  436 tacatgtcgcatttttgtaacgtacactatttacatgacttattttgatcatacttttt 494  Q
    |||||||||||||||| ||  || |||||||||||||||||| ||||| | ||||||||    
T  12007875 tacatgtcgcatttttatattgtgcactatttacatgacttaatttgaccctacttttt 12007817  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 39776649 - 39776713
Alignment:
Q  436 tacatgtcgcatttttgtaacgtacactatttacatgacttattttgatcatacttttttactaa 500  Q
    ||||| ||| ||||||| || |||||||||| |||| ||||||||||| | |||||||| |||||    
T  39776649 tacatttcgtatttttgcaatgtacactattcacataacttattttgaccgtactttttaactaa 39776713  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 36341639 - 36341703
Alignment:
Q  436 tacatgtcgcatttttgtaacgtacactatttacatgacttattttgatcatacttttttactaa 500  Q
    ||||||||||||||||| || || ||||||| |||||||||| ||| |  ||||||||| |||||    
T  36341639 tacatgtcgcatttttgcaatgtgcactattcacatgacttaatttaacgatactttttaactaa 36341703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 41898007 - 41898071
Alignment:
Q  436 tacatgtcgcatttttgtaacgtacactatttacatgacttattttgatcatacttttttactaa 500  Q
    ||||||||  ||||||| || || ||||||| || ||||||| |||||||||||||||| |||||    
T  41898007 tacatgtccaatttttgcaatgtgcactattcacttgacttactttgatcatactttttaactaa 41898071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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