View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1742-Insertion-4 (Length: 360)
Name: NF1742-Insertion-4
Description: NF1742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1742-Insertion-4 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 15533731 - 15533379
Alignment:
| Q |
8 |
atttactcaacctactattggaggactctgtttaaacctggtaaaaatatgatttatgtgtgatagaggagtagaggaatattattgcaaggaaaatggt |
107 |
Q |
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| T |
15533731 |
atttactcaacctactattggaggactctgtttaaacctggtaaaaatatgatttatgtgtgatagaggagtagaggaatattattgcaaggaaaatggt |
15533632 |
T |
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| Q |
108 |
tattgttatgagagaagtttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaattataatcactcaatctttcatgtatggtcagc |
207 |
Q |
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| T |
15533631 |
tattgttatgagagaagtttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaattataatcactcaatctttcatgtatggtcagc |
15533532 |
T |
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| Q |
208 |
agaatcttattaattgttttttctaaaattaaagtggtaatgtattatttgaagtgtttctaaaagtgttgatgttagataacattatagaataatgtag |
307 |
Q |
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| T |
15533531 |
agaatcttattaattgttttttctaaaattaaagtggtaatgtattatttgaagtgtttctaaaagtgttgatgttagataacattatagaataatgtag |
15533432 |
T |
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| Q |
308 |
cttttccttatgttcatggtttgaatgtatatttaacttttatctcctcatcc |
360 |
Q |
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| T |
15533431 |
ctcttccttatgttcatggtttgaatgtatatttaacttttatctcctcatcc |
15533379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 15517218 - 15516898
Alignment:
| Q |
8 |
atttactcaacctactattggaggactctgtttaaacctggtaaaaatatgatttatgtgtgatagaggagtagaggaatattattgcaaggaaaatggt |
107 |
Q |
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| T |
15517218 |
atttactcaacctactattggagaactctatctaagcctggtaaaaatatgatctatgtg--atagaggagtagaggaatattattgtaaggaaaatgct |
15517121 |
T |
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| Q |
108 |
tattgttatgagagaagtttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaattata-atcactcaatctttcatgtatggtcag |
206 |
Q |
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| T |
15517120 |
tattgttatgagagaaatttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaatcatatatcactcaatctcccatgtatgatcag |
15517021 |
T |
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| Q |
207 |
cagaatc-------------------ttattaattgttttttctaaaattaaagtggtaatgtattatttgaagtgtttctaaaagtgttgatgttagat |
287 |
Q |
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| T |
15517020 |
cagaatctgattagtcaaatatcctatcattaattgttttttgttaaattaaagtggtaatgtattatttgaattgtttctagaagtgttgacgttttat |
15516921 |
T |
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| Q |
288 |
aacattatagaataatgtagctt |
310 |
Q |
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| T |
15516920 |
tacattatggaataatgtagctt |
15516898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 15624503 - 15624372
Alignment:
| Q |
12 |
actcaacctactattggaggactctgtttaaacctggtaaaaatatgatttatgtgtgatagaggagtagaggaatattattgcaaggaaaatggttatt |
111 |
Q |
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| T |
15624503 |
actcaacctactattggaggactctgtctaaccatggtaaaaatatgattta--tgtactagagaagtagtggattattgttg-aaggaaaatgtttatt |
15624407 |
T |
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| Q |
112 |
gttatgagagaagtttgacaagaaacacaagaatc |
146 |
Q |
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| T |
15624406 |
gttatgagagaagtttgatgataaacgcaagaatc |
15624372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 15654184 - 15654050
Alignment:
| Q |
8 |
atttactcaacctactattggaggactctgtttaaacctggtaaaaatatgatttatgtgtgatagaggagtagaggaatattattgcaaggaaaatggt |
107 |
Q |
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| T |
15654184 |
atttactcaacatactactggagtactctatctaagcctggtaaaaatatgattta--tgtactagagaagtagtggattattattgtaagaaaaatgtg |
15654087 |
T |
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| Q |
108 |
tattgttatgagagaagtttgacaagaaacacaagaa |
144 |
Q |
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| T |
15654086 |
tattgttataacagaagtttgataataaactcaagaa |
15654050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 15645128 - 15645074
Alignment:
| Q |
12 |
actcaacctactattggaggactctgtttaaacctggtaaaaatatgatttatgt |
66 |
Q |
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| T |
15645128 |
actcaatctactattggaggactctgtctaagcctggtaaaaatatgatttatgt |
15645074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 15493392 - 15493308
Alignment:
| Q |
8 |
atttactcaacctactattggaggactctgtttaaacctggtaaaaatatgatttatgtgtgatagaggagtagaggaatattattg |
94 |
Q |
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| T |
15493392 |
atttactcaacctactattggaagactctatctaagcttggtaaaaatatgattta--tgtactagagaagtagaggattattattg |
15493308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 43987348 - 43987425
Alignment:
| Q |
98 |
ggaaaatggttattgttatgagagaagtttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaat |
175 |
Q |
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| T |
43987348 |
ggaaaatgcttattgttactagagaaatctgacaagaaacttaagaatcctatgtgacttcatgtaacacttacaaat |
43987425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 36744562 - 36744488
Alignment:
| Q |
107 |
ttattgttatgagagaagtttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaattataat |
181 |
Q |
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| T |
36744562 |
ttattgttacgagagaagtttgacaagaaacttaagaatccattgtggcagcatgtaacacttacaaataataat |
36744488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 35816988 - 35816909
Alignment:
| Q |
101 |
aaatggttattgttatgagagaagtttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaattataa |
180 |
Q |
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| T |
35816988 |
aaatgcttattgttgtgaggggtgtttgacaagaaacgcaagaattctatgtggcagcatgtaacacttacaaataataa |
35816909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 26607092 - 26607154
Alignment:
| Q |
99 |
gaaaatggttattgttatgagagaagt-ttgacaagaaacacaagaatcttatgtggcagcatg |
161 |
Q |
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| T |
26607092 |
gaaaatgtttattgttatgaga-aagtattgacaagaaacacaaaaatcctatgtggaagcatg |
26607154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 3586894 - 3586834
Alignment:
| Q |
113 |
ttatgagagaagtttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaa |
173 |
Q |
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| T |
3586894 |
ttatgagagaagtttcacaagaaatgcaagaatcctgtacggcagcatgtaacacttacaa |
3586834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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