View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1742-Insertion-5 (Length: 314)
Name: NF1742-Insertion-5
Description: NF1742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1742-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 27771255 - 27771086
Alignment:
| Q |
7 |
aggatgttcaatggatgttagttcatcaaagatatcacaaggagaaagtagtaaatcaaggtacaaaagaagagtgttgcattgtgttatgagtccaatt |
106 |
Q |
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| T |
27771255 |
aggatgttcaatggatgttagttcatcaaagatatcacaaggagaaagtagtaaatcaaggtacaaaagaagagtgttgcattgtgttatgagtccaatt |
27771156 |
T |
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| Q |
107 |
gcaatgaagagatcgttttctaatggaagattttcactaggtaaaattgatagaggaaaaaggcaaggaa |
176 |
Q |
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| T |
27771155 |
gcaatgaagagatcgttttctaatggaagattttcacttggtaaaattgatagaggaaaaaggcaaggaa |
27771086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 27771038 - 27770986
Alignment:
| Q |
225 |
atgatatattaagaagagagatagaccaattttttgtgtgaagattgcataaa |
277 |
Q |
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| T |
27771038 |
atgatatattaagaagagagacagaccaattttttgtgtgaagattgcataaa |
27770986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 12617343 - 12617286
Alignment:
| Q |
83 |
ttgcattgtgttatgagtccaattgcaatgaagagatcgttttctaatggaagatttt |
140 |
Q |
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| T |
12617343 |
ttgcattgtgtgctaagtccaattgcaatgaagagatcattttcaagtggaagatttt |
12617286 |
T |
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