View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1742-Insertion-6 (Length: 586)

Name: NF1742-Insertion-6
Description: NF1742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1742-Insertion-6
NF1742-Insertion-6
[»] chr8 (2 HSPs)
chr8 (7-575)||(32119439-32120007)
chr8 (420-519)||(26572608-26572707)
[»] chr5 (13 HSPs)
chr5 (186-305)||(14373359-14373475)
chr5 (195-305)||(14239882-14239989)
chr5 (195-305)||(41450939-41451046)
chr5 (195-305)||(41437715-41437822)
chr5 (106-184)||(14239735-14239815)
chr5 (17-73)||(14239220-14239276)
chr5 (17-73)||(41437069-41437125)
chr5 (17-73)||(41450295-41450351)
chr5 (99-184)||(41437559-41437646)
chr5 (99-184)||(41450785-41450872)
chr5 (525-573)||(38278953-38279001)
chr5 (541-575)||(38276852-38276886)
chr5 (71-99)||(14239657-14239685)
[»] chr3 (1 HSPs)
chr3 (202-299)||(22749918-22750012)


Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 7 - 575
Target Start/End: Original strand, 32119439 - 32120007
Alignment:
Q  7 aaattatacgggggcacgaaagatgcaaaagtgcattttcttgaagagtatagtagctgtcttataatgtacttatttcattagatgtttttcaccaaga 106  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  32119439 aaattatacgggggcgcgaaagatgtaaaagtgcattttcttgaagagtataggagctgtcttataatgtccttatttcattagaagtttttcaccaaga 32119538  T
Q  107 agttccataaaatcggttccaat--tgagaagatccgcatactttccactttgagtaacttttccatgtttcatgacctacagaataacaataaatactc 204  Q
    ||||||||||||| |||||||||  |||||||||| ||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||    
T  32119539 agttccataaaattggttccaatgttgagaagatcggcatactttccact--gagtaatttttccatctttcatgacctacagaataacaataaatactc 32119636  T
Q  205 accaatataaggttagcagcagtaggtaagaactcaacttgatgaataacataaacaactgtttttgaacttaaaacactcagcaagcattcctgccaca 304  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32119637 accaatataaggttagcagcagtaggtaagaacttcacttgatgaataacataaacaactgtttttgaacttaaaacactcagcaagcattcctgccaca 32119736  T
Q  305 cttataaatctaaagatagactgccatatgagacagttgtttgattgagaacaataggttgggaaatctcaaattggtaactatttgttgtacatggttc 404  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||    
T  32119737 cttataaatctaaagatagacttccatatgagacagttgtttgattgagaacaataggttgggaaatcgcaaattggtaactattagctgtacatggttc 32119836  T
Q  405 ctccaataatggttgggaaatggtctttgcaggttccttgcaaaatgatacctagccaactcagtctcatatggttcctctaatgaaagataactttagg 504  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32119837 ctccaatgatggttgggaaatggtctttgcaggttccttgcaaaatgatacctagccaactcagtctcatatggttcctctaatgaaagataactttagg 32119936  T
Q  505 tctcatattgcttatgattgtatccatgtctctctttcactatttctttttattttgtcatgtatctttaa 575  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32119937 tctcaaattgcttatgattgtatccatgtctctctttcactatttctttttattttgtcatgtatctttaa 32120007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 420 - 519
Target Start/End: Original strand, 26572608 - 26572707
Alignment:
Q  420 ggaaatggtctttgcaggttccttgcaaaatgatacctagccaactcagtctcatatggttcctctaatgaaagataactttaggtctcatattgcttat 519  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| || |||| |||||||||||||||| |||||||||| |||||||||    
T  26572608 ggaaatggtctttgcaggttccttgcaaattaatacctagccaactcagtctcacattgttcatctaatgaaagataacattaggtctcaaattgcttat 26572707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 186 - 305
Target Start/End: Complemental strand, 14373475 - 14373359
Alignment:
Q  186 agaataacaataaatactcaccaatataaggttagcagcagtaggtaagaactcaacttgatgaataacataaacaactgtttttgaacttaaaacactc 285  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||    
T  14373475 agaataacaataaatactcaccaatataaggt---cagcagtaggtaagaactccacttgatgagtaacataaacaactgtttttgaacttagaacactc 14373379  T
Q  286 agcaagcattcctgccacac 305  Q
    ||||||||||||||||||||    
T  14373378 agcaagcattcctgccacac 14373359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 195 - 305
Target Start/End: Original strand, 14239882 - 14239989
Alignment:
Q  195 ataaatactcaccaatataaggttagcagcagtaggtaagaactcaacttgatgaataacataaacaactgtttttgaacttaaaacactcagcaagcat 294  Q
    |||||||||||||||||||||||   ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| ||||||||||    
T  14239882 ataaatactcaccaatataaggt---cagcagtaggtaagaactccacttgatgagtaacataaacaactgtttttgagcttaaaacacccagcaagcat 14239978  T
Q  295 tcctgccacac 305  Q
    |||||| ||||    
T  14239979 tcctgcaacac 14239989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 195 - 305
Target Start/End: Original strand, 41450939 - 41451046
Alignment:
Q  195 ataaatactcaccaatataaggttagcagcagtaggtaagaactcaacttgatgaataacataaacaactgtttttgaacttaaaacactcagcaagcat 294  Q
    |||||||||||||||||||||||   ||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||  |||||||||    
T  41450939 ataaatactcaccaatataaggt---cagcagtaggtaagaactccacttgatgagtaacataaacaactgtttttgagcttaaaacaccgagcaagcat 41451035  T
Q  295 tcctgccacac 305  Q
    |||||||||||    
T  41451036 tcctgccacac 41451046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 195 - 305
Target Start/End: Original strand, 41437715 - 41437822
Alignment:
Q  195 ataaatactcaccaatataaggttagcagcagtaggtaagaactcaacttgatgaataacataaacaactgtttttgaacttaaaacactcagcaagcat 294  Q
    ||||||||||||| |||||||||   ||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||||||| ||||||||||    
T  41437715 ataaatactcaccgatataaggt---cagcagtaggtaagaactccacttggtgagtaacataaacaactgtttttgagcttaaaacacccagcaagcat 41437811  T
Q  295 tcctgccacac 305  Q
    |||||||||||    
T  41437812 tcctgccacac 41437822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 14239735 - 14239815
Alignment:
Q  106 aagttccataaaatcggttccaat--tgagaagatccgcatactttccactttgagtaacttttccatgtttcatgaccta 184  Q
    ||||||||||||||| || |||||  | || ||||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  14239735 aagttccataaaatcagtcccaatgttaagcagatcagcatactttccactttgagtaatttttccatctttcatgaccta 14239815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 14239220 - 14239276
Alignment:
Q  17 ggggcacgaaagatgcaaaagtgcattttcttgaagagtatagtagctgtcttataa 73  Q
    |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||    
T  14239220 ggggcacggaaaatgcacaagtgcattttattgaagagtatagtagctgtcttataa 14239276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 41437069 - 41437125
Alignment:
Q  17 ggggcacgaaagatgcaaaagtgcattttcttgaagagtatagtagctgtcttataa 73  Q
    |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||    
T  41437069 ggggcacggaaaatgcacaagtgcattttattgaagagtatagtagctgtcttataa 41437125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 41450295 - 41450351
Alignment:
Q  17 ggggcacgaaagatgcaaaagtgcattttcttgaagagtatagtagctgtcttataa 73  Q
    |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||    
T  41450295 ggggcacggaaaatgcacaagtgcattttattgaagagtatagtagctgtcttataa 41450351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 41437559 - 41437646
Alignment:
Q  99 caccaagaagttccataaaatcggttccaat--tgagaagatccgcatactttccactttgagtaacttttccatgtttcatgaccta 184  Q
    |||||| ||||||||||||||| || |||||  | || ||||| |||||||||||||||||||||| ||| || | ||||||||||||    
T  41437559 caccaacaagttccataaaatcagtcccaatgttaagcagatcggcatactttccactttgagtaattttcccgtctttcatgaccta 41437646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 41450785 - 41450872
Alignment:
Q  99 caccaagaagttccataaaatcggttccaat--tgagaagatccgcatactttccactttgagtaacttttccatgtttcatgaccta 184  Q
    |||||| |||||||||||| || || |||||  | || ||||| |||||||||||||||||||||||||| || | ||||||||||||    
T  41450785 caccaacaagttccataaagtcagtcccaatgttaagcagatcggcatactttccactttgagtaactttcccgtctttcatgaccta 41450872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 525 - 573
Target Start/End: Original strand, 38278953 - 38279001
Alignment:
Q  525 tatccatgtctctctttcactatttctttttattttgtcatgtatcttt 573  Q
    |||| ||||||||| || |||||||||||||||||| ||||||||||||    
T  38278953 tatcaatgtctctcctttactatttctttttattttatcatgtatcttt 38279001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 541 - 575
Target Start/End: Original strand, 38276852 - 38276886
Alignment:
Q  541 tcactatttctttttattttgtcatgtatctttaa 575  Q
    ||||||||||||||||||||||||||||| |||||    
T  38276852 tcactatttctttttattttgtcatgtatatttaa 38276886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 14239657 - 14239685
Alignment:
Q  71 taatgtacttatttcattagatgtttttc 99  Q
    |||||||||||||||||||||||||||||    
T  14239657 taatgtacttatttcattagatgtttttc 14239685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 22749918 - 22750012
Alignment:
Q  202 ctcaccaatataaggttagcagcagtaggtaagaactcaacttgatgaataacataaacaactgtttttgaacttaaaacactcagcaagcattcctg 299  Q
    |||||||| ||||||| ||||||||   |||||||||| ||||||||  | ||||| |  ||||| |||||||||||||   ||||||||||||||||    
T  22749918 ctcaccaagataaggtcagcagcag---gtaagaactctacttgatgtgtgacatagatcactgtctttgaacttaaaagtttcagcaagcattcctg 22750012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University