View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1742-Insertion-7 (Length: 252)
Name: NF1742-Insertion-7
Description: NF1742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1742-Insertion-7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 33878334 - 33878578
Alignment:
| Q |
8 |
ggtacttgttcttgtatttacacaactttattcgactttgagtatttcttgcactgtcagcgtagactcaagagaataaacctataannnnnnnnnnnaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33878334 |
ggtacttgttcttgtatttacacaactttattcgactttgagtatttcttgcactgtcagcgtagactcaagagaataaacctataattttttttttaaa |
33878433 |
T |
|
| Q |
108 |
aggtgaataaacctataaacttagaatccaacaaagatctaatttgaatctttaattggtgatcaatttcatttgttgatgagatatttaattccctttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33878434 |
aggtgaataaacctataaacttagaatccaacaaagatctaatttgaatctttaattggtgatcaatttcatttgttgatgagatatttaattccctttc |
33878533 |
T |
|
| Q |
208 |
atcactatatagtataatttcaaaacaagattatatacatgttta |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33878534 |
atcactatatagtataatttcaaaacaagattatatacatgttta |
33878578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University