View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1742-Insertion-8 (Length: 911)
Name: NF1742-Insertion-8
Description: NF1742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1742-Insertion-8 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 8 - 489
Target Start/End: Complemental strand, 42551760 - 42551279
Alignment:
| Q |
8 |
tatattgtctcttcaacaaagagacccaagggtgtttcacagtttttgaaacatcactagctacaaccaaatcttgaaactcctcatcaacgtcagtagt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551760 |
tatattgtctcttcaacaaagagacccaagggtgtttcacagtttttgaaacatcactagctacaaccaaatcttgaaactcctcatcaacgtcagtagt |
42551661 |
T |
|
| Q |
108 |
tccacgcatattaatcaattcttgtttggctttgtcattttgaccacgctcaatcaaagaactcggtgagtcgggaaggaacattgcacctaaggtaaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42551660 |
tccacgcatattaatcaattcttgtttggctttgtcattttgaccacgctcaatcaaagaactcggtgagtcgggaaggaacattgcacctaaggtaaac |
42551561 |
T |
|
| Q |
208 |
attattccagggatagaagcaaaactcaaactgtagcgccatccctccccgttcttcattttcgcaaacatgaaattgaggatattagccacaaagatgc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551560 |
attattccagggatagaagcaaaactcaaactgtagcgccatccctccccgttcttcattttcgcaaacatgaaattgaggatattagccacaaagatgc |
42551461 |
T |
|
| Q |
308 |
ctatagtgattgccaattgaaacatcatattaagagctcctctgtaattgtatggagcaacttcagacacgtatattggcacactctatcaaagaaacaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551460 |
ctatagtgattgccaattgaaacatcatattaagagctcctctgtaattgtatggagcaacttcagacacgtatattggcacactctatcaaagaaacaa |
42551361 |
T |
|
| Q |
408 |
aaagaaattaacattaattgtgacctaagtatattgtgaaacctataaatattaaagagatacacactaatgttgggtatgc |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551360 |
aaagaaattaacattaattgtgacctaagtatattgtgaaacctataaatattaaagagatacacactaatgttgggtatgc |
42551279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 618 - 911
Target Start/End: Complemental strand, 42551151 - 42550858
Alignment:
| Q |
618 |
ttatgaataaacatccgaattaaataacaataatgttaattacctgaatagcacatcctattccaaacccaagtaacatgcgaccaagaatgagcatcca |
717 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551151 |
ttatgaataaacatccgaagtaaataacaataatgttaattacctgaatagcacatcctattccaaacccaagtaacatgcgaccaagaatgagcatcca |
42551052 |
T |
|
| Q |
718 |
aacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggat |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551051 |
aacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggat |
42550952 |
T |
|
| Q |
818 |
gccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgtttggctatcgaatctgcagtactggttggtagaag |
911 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42550951 |
gccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgtttggctatcgaatctgcagtactggttggtagaag |
42550858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 234 - 389
Target Start/End: Original strand, 42518521 - 42518676
Alignment:
| Q |
234 |
caaactgtagcgccatccctccccgttcttcattttcgcaaacatgaaattgaggatattagccacaaagatgcctatagtgattgccaattgaaacatc |
333 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| || ||||| | |||||||||| || |||||||| ||||||||||| ||||||||||| |||||| |
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|
| T |
42518521 |
caaactgtatcgccatccttccccgttcttcatctttgcaaaaaaataattgaggatgttggccacaaaaatgcctatagttattgccaattggaacatc |
42518620 |
T |
|
| Q |
334 |
atattaagagctcctctgtaattgtatggagcaacttcagacacgtatattggcac |
389 |
Q |
| |
|
|| |||||||||||||| || ||||| |||||||||||||||| || |||||||| |
|
|
| T |
42518621 |
atgttaagagctcctctatacttgtagggagcaacttcagacatatagattggcac |
42518676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 225 - 390
Target Start/End: Original strand, 1240190 - 1240355
Alignment:
| Q |
225 |
agcaaaactcaaactgtagcgccatccctccccgttcttcattttcgcaaacatgaaattgaggatattagccacaaagatgcctatagtgattgccaat |
324 |
Q |
| |
|
|||||| | ||||||||| |||||||| |||||||||||||| || ||||| | |||||||||| || |||||||| ||||||||||| |||| |||| |
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|
| T |
1240190 |
agcaaatcccaaactgtaccgccatccttccccgttcttcatgtttgcaaaaaaataattgaggatgttggccacaaaaatgcctatagttattgacaat |
1240289 |
T |
|
| Q |
325 |
tgaaacatcatattaagagctcctctgtaattgtatggagcaacttcagacacgtatattggcaca |
390 |
Q |
| |
|
|| |||||||| |||||||||||||| || ||||| |||||||| || |||| || ||||||||| |
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|
| T |
1240290 |
tggaacatcatgttaagagctcctctatacttgtagggagcaacctcggacagatagattggcaca |
1240355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 657 - 866
Target Start/End: Original strand, 42518973 - 42519182
Alignment:
| Q |
657 |
ttacctgaatagcacatcctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaag |
756 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||||||| |||| | |||||||| || | || ||| || ||||||| |||||| || || || |
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|
| T |
42518973 |
ttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatggcagctccggcgag |
42519072 |
T |
|
| Q |
757 |
aaaaagcacacctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagag |
856 |
Q |
| |
|
|||||| ||||| ||||| | |||||| ||||| |||||||| || |||||| |||||||| ||||| || || |||||||| ||||||||||||||| |
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|
| T |
42519073 |
aaaaagaacaccaccagagagcatggtaagacgtcttccaaagattctagttacagtggatgctccaagagaagccacaagagcggccaaatacaaagag |
42519172 |
T |
|
| Q |
857 |
gaggtaaaca |
866 |
Q |
| |
|
|| ||||||| |
|
|
| T |
42519173 |
gatgtaaaca |
42519182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 657 - 897
Target Start/End: Original strand, 1240752 - 1240992
Alignment:
| Q |
657 |
ttacctgaatagcacatcctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaag |
756 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||||||| |||| | |||||||| || | || ||| || ||||||| ||||| ||||| || |
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|
| T |
1240752 |
ttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatagcagctccagcgag |
1240851 |
T |
|
| Q |
757 |
aaaaagcacacctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagag |
856 |
Q |
| |
|
|||||| ||||| ||||| | |||||| ||| | |||||||| || |||| | |||||||| ||||| || || |||||||| ||||||||||||||| |
|
|
| T |
1240852 |
aaaaagaacaccaccagagagcatggtaagatgtcttccaaagattctagttgcggtggatgctccaagagaagccacaagagcggccaaatacaaagag |
1240951 |
T |
|
| Q |
857 |
gaggtaaacaatgttaacgtttggctatcgaatctgcagta |
897 |
Q |
| |
|
|| |||||||| |||| || || || |||||| ||||||| |
|
|
| T |
1240952 |
gatgtaaacaacgttagtgtctgactgtcgaatttgcagta |
1240992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 564
Target Start/End: Complemental strand, 42551244 - 42551203
Alignment:
| Q |
523 |
ttgtgttttcttacctaataaaagagaacaaggatgagttct |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42551244 |
ttgtgttttcttacctaataaaagagaacaaggatgagttct |
42551203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 8e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 14 - 400
Target Start/End: Original strand, 18234455 - 18234841
Alignment:
| Q |
14 |
gtctcttcaacaaagagacccaagggtgtttcacagtttttgaaacatcactagctacaaccaaatcttgaaactcctcatcaacgtcagtagttccacg |
113 |
Q |
| |
|
||||| ||||||||||| ||||||| |||| |||||||||||||| |||||||||| |||||||||||||||||||||| || || || || |||||||| |
|
|
| T |
18234455 |
gtctcgtcaacaaagaggcccaaggatgttccacagtttttgaaatatcactagctgcaaccaaatcttgaaactcctcgtccacatcggttgttccacg |
18234554 |
T |
|
| Q |
114 |
catattaatcaattcttgtttggctttgtcattttgaccacgctcaatcaaagaactcggtgagtcgggaaggaacattgcacctaaggtaaacattatt |
213 |
Q |
| |
|
||| | |||||||||| ||||||||| ||||||||||| ||||| ||||||||||| || | ||||||||| || ||||||||| | ||| ||||||| |
|
|
| T |
18234555 |
gatacttatcaattcttttttggctttatcattttgaccgcgctcgatcaaagaacttggcgtgtcgggaagaaagattgcacctgtgataatcattatt |
18234654 |
T |
|
| Q |
214 |
ccagggatagaagcaaaactcaaactgtagcgccatccctccccgttcttcattttcgcaaacatgaaattgaggatattagccacaaagatgcctatag |
313 |
Q |
| |
|
|||||| | ||| |||| ||||||||| |||||||| || ||||| |||||||| | ||||| | ||||| ||||| ||||||||||||||||| | |
|
|
| T |
18234655 |
gcagggacggcagccaaacccaaactgtaacgccatccttcaccgtttttcattttagaaaacacatagttgagaatattggccacaaagatgcctattg |
18234754 |
T |
|
| Q |
314 |
tgattgccaattgaaacatcatattaagagctcctctgtaattgtatggagcaacttcagacacgtatattggcacactctatcaaa |
400 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| || || || ||||| || ||||| || || ||||||||||||| ||||| |
|
|
| T |
18234755 |
tgattgccaattggaacatcatgttaagagctcctctatacttatacggagccacctcagaaacataaattggcacactctgtcaaa |
18234841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 657 - 904
Target Start/End: Original strand, 18235185 - 18235432
Alignment:
| Q |
657 |
ttacctgaatagcacatcctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaag |
756 |
Q |
| |
|
|||||||| |||||||||| || || || ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
18235185 |
ttacctgattagcacatccaataccgaatccaagtaacatacgaccaacaatgagcatccaaacctcttgagcaaagccattcatggcagcaccagcaag |
18235284 |
T |
|
| Q |
757 |
aaaaagcacacctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagag |
856 |
Q |
| |
|
|||||| ||||| ||||||| |||||||| ||| ||||||| | |||||||| || |||||||| ||||| | ||||||||||| ||||||||| |
|
|
| T |
18235285 |
aaaaagaacaccaccagaaagcatggtgatacgtcttccaagcactcgagttagccacgacgccccaagagatgcgataagagcagccacgtacaaagag |
18235384 |
T |
|
| Q |
857 |
gaggtaaacaatgttaacgtttggctatcgaatctgcagtactggttg |
904 |
Q |
| |
|
|| || || ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
18235385 |
gatgtgaataatgttaacgtttggctgtcgaatttgcagtactggttg |
18235432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 657 - 867
Target Start/End: Original strand, 41972385 - 41972595
Alignment:
| Q |
657 |
ttacctgaatagcacatcctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaag |
756 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||||||| |||| | |||||||| || | || ||| || ||||||| ||||| ||||| || |
|
|
| T |
41972385 |
ttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatagcagctccagcgag |
41972484 |
T |
|
| Q |
757 |
aaaaagcacacctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagag |
856 |
Q |
| |
|
|||||| ||||| ||||| | |||||| ||||| |||||||| || |||||| |||||||| ||||| || | |||||||| ||||||||||||||| |
|
|
| T |
41972485 |
aaaaagaacaccaccagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaatccacaagagcggccaaatacaaagag |
41972584 |
T |
|
| Q |
857 |
gaggtaaacaa |
867 |
Q |
| |
|
|| |||||||| |
|
|
| T |
41972585 |
gatgtaaacaa |
41972595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 41971890 - 41971985
Alignment:
| Q |
295 |
gccacaaagatgcctatagtgattgccaattgaaacatcatattaagagctcctctgtaattgtatggagcaacttcagacacgtatattggcaca |
390 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||| |||||||| |||||||||||||| || ||||| |||||||| ||||||| || ||||||||| |
|
|
| T |
41971890 |
gccacaaaaatgcctatagttattgacaattggaacatcatgttaagagctcctctatacttgtagggagcaacctcagacagatagattggcaca |
41971985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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