View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17420_high_11 (Length: 251)
Name: NF17420_high_11
Description: NF17420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17420_high_11 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 6929981 - 6929841
Alignment:
| Q |
111 |
gtgctatgaaaaagggacttaaaaaattttaaaggattttttcgttcctgatagtaatttatttaatcggtggatggaagcatactctggatcggagtta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6929981 |
gtgctatgaaaaagggacttaaaaaattttaaaggattttttcgttcctgatagtaatttatttaatcggtggatggaagcatactctggatcggagtta |
6929882 |
T |
|
| Q |
211 |
tggggagtactgcttgattttttctaccaacttaaagcccc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6929881 |
tggggagtactgcttgattttttctaccaacttaaagcccc |
6929841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 6930075 - 6930033
Alignment:
| Q |
17 |
atgaatatggatataagaaatcatagcacaaaaaagagatctg |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6930075 |
atgaatatggatataagaaatcatagcacaaaaaagagatctg |
6930033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 14542546 - 14542406
Alignment:
| Q |
111 |
gtgctatgaaaaagggacttaaaaaattttaaaggattttttcgttcctgatagtaatttatttaatcggtggatggaagcatactctggatcggagtta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14542546 |
gtgctatgaaaaagggacttaaaaaattttaaaggattttttcgttcctgatagtaatttatttaatcggtggatggaagcatactctggatcggagtta |
14542447 |
T |
|
| Q |
211 |
tggggagtactgcttgattttttctaccaacttaaagcccc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14542446 |
tggggagtactgcttgattttttctaccaacttaaagcccc |
14542406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 14542640 - 14542598
Alignment:
| Q |
17 |
atgaatatggatataagaaatcatagcacaaaaaagagatctg |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14542640 |
atgaatatggatataagaaatcatagcacaaaaaagagatctg |
14542598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 506049 - 505909
Alignment:
| Q |
111 |
gtgctatgaaaaagggacttaaaaaattttaaaggattttttcgttcctgatagtaatttatttaatcggtggatggaagcatactctggatcggagtta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506049 |
gtgctatgaaaaagggacttaaaaaattttaaaggattttttcgttcctgatagtaatttatttaatcggtggatggaagcatactctggatcggagtta |
505950 |
T |
|
| Q |
211 |
tggggagtactgcttgattttttctaccaacttaaagcccc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
505949 |
tggggagtactgcttgattttttctaccaacttaaagcccc |
505909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 111 - 251
Target Start/End: Original strand, 18042581 - 18042721
Alignment:
| Q |
111 |
gtgctatgaaaaagggacttaaaaaattttaaaggattttttcgttcctgatagtaatttatttaatcggtggatggaagcatactctggatcggagtta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18042581 |
gtgctatgaaaaagggacttaaaaaattttaaaggattttttcgttcctgatagtaatttatttaatcggtggatggaagcatactctggatcggagtta |
18042680 |
T |
|
| Q |
211 |
tggggagtactgcttgattttttctaccaacttaaagcccc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18042681 |
tggggagtactgcttgattttttctaccaacttaaagcccc |
18042721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 506143 - 506101
Alignment:
| Q |
17 |
atgaatatggatataagaaatcatagcacaaaaaagagatctg |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506143 |
atgaatatggatataagaaatcatagcacaaaaaagagatctg |
506101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 18042487 - 18042529
Alignment:
| Q |
17 |
atgaatatggatataagaaatcatagcacaaaaaagagatctg |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18042487 |
atgaatatggatataagaaatcatagcacaaaaaagagatctg |
18042529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 48553119 - 48553088
Alignment:
| Q |
111 |
gtgctatgaaaaagggacttaaaaaattttaa |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48553119 |
gtgctatgaaaaagggacttaaaaaattttaa |
48553088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 48553208 - 48553167
Alignment:
| Q |
17 |
atgaatatggatataagaaatcatagcacaaaaaagagatctg |
59 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48553208 |
atgaatatggatataagaaatcata-aacaaaaaagagatctg |
48553167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University