View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17420_high_5 (Length: 419)

Name: NF17420_high_5
Description: NF17420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17420_high_5
NF17420_high_5
[»] scaffold0083 (2 HSPs)
scaffold0083 (152-404)||(50543-50795)
scaffold0083 (11-121)||(50805-50915)
[»] chr3 (26 HSPs)
chr3 (171-379)||(10076299-10076505)
chr3 (11-120)||(10214793-10214903)
chr3 (11-120)||(10223534-10223644)
chr3 (11-119)||(10103857-10103966)
chr3 (78-242)||(11768325-11768494)
chr3 (11-109)||(10123657-10123755)
chr3 (11-109)||(10180311-10180409)
chr3 (303-386)||(10376658-10376741)
chr3 (303-385)||(10364611-10364693)
chr3 (11-109)||(10256426-10256524)
chr3 (163-242)||(10031125-10031204)
chr3 (157-242)||(9838029-9838114)
chr3 (157-242)||(9848907-9848992)
chr3 (57-109)||(10028802-10028854)
chr3 (157-242)||(9837824-9837907)
chr3 (157-242)||(9848702-9848785)
chr3 (157-242)||(10126060-10126145)
chr3 (163-242)||(10657930-10658006)
chr3 (157-242)||(10662639-10662721)
chr3 (181-242)||(10104042-10104100)
chr3 (203-242)||(10214934-10214972)
chr3 (203-242)||(10223675-10223713)
chr3 (163-242)||(10516630-10516706)
chr3 (207-242)||(10123754-10123790)
chr3 (207-242)||(10256523-10256559)
chr3 (176-232)||(10259874-10259930)
[»] chr5 (3 HSPs)
chr5 (11-120)||(26793376-26793486)
chr5 (11-97)||(26818892-26818979)
chr5 (203-242)||(26793517-26793555)


Alignment Details
Target: scaffold0083 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 152 - 404
Target Start/End: Complemental strand, 50795 - 50543
Alignment:
Q  152 gtgactgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagctttaaatacagt 251  Q
    ||||||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50795 gtgactgcaatttttcctttttctttgtatcaattattttgtgggatgtgggtccaatattaaccactgctgagctttgctttccagctttaaatacagt 50696  T
Q  252 actgttaaccattaattcacatacagctaagtcttcatgagtttacctttactatatacacttccaaccattcaaaaacagcactgtcagtgttatccat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50695 actgttaaccattaattcacatacagctaagtcttcatgagtttacctttactatatgcacttccaaccattcaaaaacagcactgtcagtgttatccat 50596  T
Q  352 tcattcacaaccgactcttctttgagtcattgctcgtaatttccatcaaaatt 404  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50595 tcattcacaaccgagtcttctttgagtcattgctcgtaatttccatcaaaatt 50543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 50915 - 50805
Alignment:
Q  11 cacagatgataagaaaaatgacaacatgatacatttattttagtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  50915 cacagatgataagaaaaatgacaacatgatacatttattttcgtatatgagaggagtttaactagaaattgcatatttgaatcactttccaaaagtaaaa 50816  T
Q  111 atatatataat 121  Q
    || ||||||||    
T  50815 atgtatataat 50805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 171 - 379
Target Start/End: Original strand, 10076299 - 10076505
Alignment:
Q  171 tttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt-aaatacagtactgttaaccattaattc 269  Q
    |||| ||||||||||||||||||  ||||| |||||||||||||||||| ||||||||| |||||||||||| ||||   ||    ||   |||||||||    
T  10076299 tttccttgtatcaattattttgtgggatgtgggtccaatattaaccactactgagctttactttccagctttcaaattttgt----ttcttcattaattc 10076394  T
Q  270 acatacagctaagtcttcatgagtttacc-tttactatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactc 368  Q
    |||||||  ||||||||| ||||| |||| ||||| |||| |||||||||||| ||||||||||| |||| |||||||||||||||||||||| ||| ||    
T  10076395 acatacatataagtcttcttgagtctaccctttacaatatgcacttccaaccactcaaaaacagcgctgttagtgttatccattcattcacaagcgagtc 10076494  T
Q  369 ttctttgagtc 379  Q
    |||||||||||    
T  10076495 ttctttgagtc 10076505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 10214793 - 10214903
Alignment:
Q  11 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 109  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || || |||||    
T  10214793 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaa 10214892  T
Q  110 aatatatataa 120  Q
    ||| |||||||    
T  10214893 aatgtatataa 10214903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 10223534 - 10223644
Alignment:
Q  11 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 109  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || || |||||    
T  10223534 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaa 10223633  T
Q  110 aatatatataa 120  Q
    ||| |||||||    
T  10223634 aatgtatataa 10223644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 10103857 - 10103966
Alignment:
Q  11 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 109  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| || ||||||||    
T  10103857 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggaatttaactagaaattgcatatttgactcactttcctaaagtaaa 10103956  T
Q  110 aatatatata 119  Q
    ||| ||||||    
T  10103957 aatgtatata 10103966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 11768325 - 11768494
Alignment:
Q  78 attgcatatttgaatcacttaccaaaagtaaaaatatatataat-tatatgctatttaa-gattccgatggttttagtgac---tgcaatttttcctttt 172  Q
    |||||||||||||||||||| |||||||||||||| |||||||  ||| |||||||||| |||| |||||  |||| | |    ||||| ||||||||||    
T  11768325 attgcatatttgaatcactttccaaaagtaaaaatgtatataaagtatctgctatttaaagatttcgatgcctttaattaagtgtgcaacttttcctttt 11768424  T
Q  173 tcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    || ||||||||||||||||||  ||||| |||||||||||||||| || ||| ||||||||||| |||||    
T  11768425 tctttgtatcaattattttgtgggatgtaggtccaatattaaccaatggtgaactttgctttcccgcttt 11768494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 10123657 - 10123755
Alignment:
Q  11 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 109  Q
    ||||| |||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10123657 cacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 10180311 - 10180409
Alignment:
Q  11 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 109  Q
    ||||| |||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10180311 cacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10180409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 10376741 - 10376658
Alignment:
Q  303 ctatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgctc 386  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||| ||||||    
T  10376741 ctatatgcacttccaaccattcaaaaacagcactgttagtgttatccattcactcacaagcgagtcttctttgagtctttgctc 10376658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 303 - 385
Target Start/End: Complemental strand, 10364693 - 10364611
Alignment:
Q  303 ctatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgct 385  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||| |||||    
T  10364693 ctatatgcacttccaaccattcaaaaacagcactgttagtgttatccattcattcacaagcaagtcttctttgagtctttgct 10364611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 10256426 - 10256524
Alignment:
Q  11 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 109  Q
    ||||| |||||||||||||||||  ||| ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10256426 cacaggtgataagaaaaatgacat-atgctacgtttatttttagtatatgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10256524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 10031125 - 10031204
Alignment:
Q  163 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || |||||||||||||||||||||    
T  10031125 tttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgagctttgctttccagcttt 10031204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 9838029 - 9838114
Alignment:
Q  157 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    ||||| |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || | |||||||||||||||||||    
T  9838029 tgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgttaagctttgctttccagcttt 9838114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 9848907 - 9848992
Alignment:
Q  157 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    ||||| |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || | |||||||||||||||||||    
T  9848907 tgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgttaagctttgctttccagcttt 9848992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 10028802 - 10028854
Alignment:
Q  57 atgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 109  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10028802 atgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10028854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 9837824 - 9837907
Alignment:
Q  157 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    ||||| |||||||||||| ||| ||||||||||||||  ||||| ||||||||||||| || ||   |||||||||||||||||||    
T  9837824 tgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagctttgctttccagcttt 9837907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 9848702 - 9848785
Alignment:
Q  157 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    ||||| |||||||||||| ||| ||||||||||||||  ||||| ||||||||||||| || ||   |||||||||||||||||||    
T  9848702 tgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagctttgctttccagcttt 9848785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 10126060 - 10126145
Alignment:
Q  157 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    ||||| |||| ||||| | |||||||||||||||||   ||||| ||||||||||||| || || ||| |||||||||||||||||    
T  10126060 tgcaactttttcttttgctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgacctttgctttccagcttt 10126145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 10657930 - 10658006
Alignment:
Q  163 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    |||||||||||| ||||||||||||||||| | ||||| |||||   ||||| ||||| ||| |||||||||||||||||    
T  10657930 ttttcctttttctttgtatcaattattttgaaggatgtgggtcc---attaatcactgatgacctttgctttccagcttt 10658006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 10662639 - 10662721
Alignment:
Q  157 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    ||||| |||||||||||| |||||| |||||||||| | ||||| |||||   ||||| ||||| ||| |||||||||||||||||    
T  10662639 tgcaacttttcctttttctttgtattaattattttgaaggatgtgggtcc---attaatcactgatgaactttgctttccagcttt 10662721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 10104042 - 10104100
Alignment:
Q  181 tcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    |||||||||||||  |||||  ||||||||||||| ||||||||||||||||||||||||||    
T  10104042 tcaattattttgtgggatgt--gtccaatattaac-actgctgagctttgctttccagcttt 10104100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 10214934 - 10214972
Alignment:
Q  203 gtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  10214934 gtccaatattaac-actgctgagctttgctttccagcttt 10214972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 10223675 - 10223713
Alignment:
Q  203 gtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  10223675 gtccaatattaac-actgctgagctttgctttccagcttt 10223713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 10516630 - 10516706
Alignment:
Q  163 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    |||||||||||| ||||||||||||||||| | ||||| |||||   | ||| ||||| ||| || ||||||||||||||    
T  10516630 ttttcctttttctttgtatcaattattttgaaggatgtgggtcc---agtaatcactgatgacctatgctttccagcttt 10516706  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 10123754 - 10123790
Alignment:
Q  207 aatattaaccactgctgagc-tttgctttccagcttt 242  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10123754 aatattaaccactgctgagcttttgctttccagcttt 10123790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 10256523 - 10256559
Alignment:
Q  207 aatattaaccactgctgagc-tttgctttccagcttt 242  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10256523 aatattaaccactgctgagcttttgctttccagcttt 10256559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 10259874 - 10259930
Alignment:
Q  176 ttgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgct 232  Q
    ||||||||||||||||| | ||||| ||||||||||||| || || ||| |||||||    
T  10259874 ttgtatcaattattttgaaggatgtgggtccaatattaaacaatgatgacctttgct 10259930  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 26793376 - 26793486
Alignment:
Q  11 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 109  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || || |||||    
T  26793376 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaa 26793475  T
Q  110 aatatatataa 120  Q
    ||| |||||||    
T  26793476 aatgtatataa 26793486  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 26818892 - 26818979
Alignment:
Q  11 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcactt 97  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  26818892 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactt 26818979  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 26793517 - 26793555
Alignment:
Q  203 gtccaatattaaccactgctgagctttgctttccagcttt 242  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  26793517 gtccaatattaac-actgctgagctttgctttccagcttt 26793555  T

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