View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17420_low_1 (Length: 560)
Name: NF17420_low_1
Description: NF17420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17420_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 12727234 - 12727523
Alignment:
| Q |
20 |
gctctctgtgcatttatatcaaggagggtgacctcggttgagatatacaagggacatcaatgatgcttcctccttcaagattaattagttgggatatggt |
119 |
Q |
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| T |
12727234 |
gctctctgtgaatttatatcaaggagggtgacctcggttgagatatacaagggacatcaatgatgcttcctccttcaagattaattagttgggatatggt |
12727333 |
T |
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| Q |
120 |
aacttcaaataaccgatggaccattcttacaagggctatagtactgatatctaagggatctatttcctttcatatttcttcttctatttggatcgatgtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12727334 |
aacttcaaataaccgatggaccattcttacaagggctatagtactgatatctaagggatctatttcctttcatattatttcttctatttggatcgatgtg |
12727433 |
T |
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| Q |
220 |
aagcataagctccttattttgattgaacaatgagcatagccttgggacaagattaattaagggctagaggttacaacatggtttccatga |
309 |
Q |
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| T |
12727434 |
aagcataagctccttatttttatggagcaatgagcatagccttgggacaagattaattaagggctagaggttacaacatggtttccatga |
12727523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 310 - 543
Target Start/End: Original strand, 12790824 - 12791058
Alignment:
| Q |
310 |
taatgtaaatgataatgttaaggattttccaagccctgcaatttgtgcaggaattttcagggataaaaatgctannnnnnnaggtggatttgttgtcaat |
409 |
Q |
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| T |
12790824 |
taatataaatgataatgttaaggattttccaagccctgcaatttgtgcaggaattttcagggataaaaatgctatttttttaggtggatttgttgtcaat |
12790923 |
T |
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| Q |
410 |
ctgcacatcactacttcttttcagggtgaacattatggaa-taataaacactattgttcctcgacacttaaagaatagatggttgaattgtatgaagtta |
508 |
Q |
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| T |
12790924 |
ctgcacatcactacttcttttcagggtgagcattatggaattaataaacactattgttcctcgacacttaaggaatagatggttgaattgtatgaagtta |
12791023 |
T |
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| Q |
509 |
acnnnnnnngtgtgcaattttacatttctcatatt |
543 |
Q |
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| T |
12791024 |
acaaaaaaagcgtgcaattttacatttctcatatt |
12791058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 84 - 309
Target Start/End: Original strand, 12790219 - 12790435
Alignment:
| Q |
84 |
gcttcctccttcaagattaattagttgggatatggtaacttcaaataaccgatggaccattcttacaagggctatagtactgatatctaagggatctatt |
183 |
Q |
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| T |
12790219 |
gcttcctccttcaagattaattagttg--------taacttcaaataaccgatggaccattctaacaagg-ctatagtactgatatctaagggatctatt |
12790309 |
T |
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| Q |
184 |
tcctttcatatttcttcttctatttggatcgatgtgaagcataagctccttattttgattgaacaatgagcatagccttgggacaagattaattaagggc |
283 |
Q |
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| T |
12790310 |
tcctttcatattatttcttctatttggatcgatgtgaagcataagctccttatttttatggagcaatgagcatagccttgggacaagattaattaagggc |
12790409 |
T |
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| Q |
284 |
tagaggttacaacatggtttccatga |
309 |
Q |
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| T |
12790410 |
tagaggttacaacatggtttccatga |
12790435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 310 - 543
Target Start/End: Original strand, 12727912 - 12728145
Alignment:
| Q |
310 |
taatgtaaatgataatgttaaggattttccaagccctgcaatttgtgcaggaattttcagggataaaaatgctannnnnnnaggtggatttgttgtcaat |
409 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12727912 |
taatataaatgataatgttaaggattttccaagccctgcaatttgtgcaggaattttcagggataaaaatgctatttttttaggtggatttgttgtcaat |
12728011 |
T |
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| Q |
410 |
ctgcacatcactacttcttttcagggtgaacattatggaataataaacactattgttcctcgacacttaaagaatagatggttgaattgtatgaagttaa |
509 |
Q |
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|| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12728012 |
ctacacatcactacttcttttcagggtgagcattatgaaataataaacactattgttcctcgacacttaaggaatagatggttgaattgtatgaagttaa |
12728111 |
T |
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| Q |
510 |
cnnnnnnngtgtgcaattttacatttctcatatt |
543 |
Q |
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| | || ||||||||||||||||||||| |
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| T |
12728112 |
caaaaaaagcgtacaattttacatttctcatatt |
12728145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 12788727 - 12788795
Alignment:
| Q |
20 |
gctctctgtgcatttatatcaaggagggtgacctcggttgagatatacaagggacatcaatgatgcttc |
88 |
Q |
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| T |
12788727 |
gctctctgtgaatttatatcaaggagggtgacctcggttgagatatacaagggacatcaatgatgcttc |
12788795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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