View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17420_low_12 (Length: 281)
Name: NF17420_low_12
Description: NF17420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17420_low_12 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 26675998 - 26676250
Alignment:
| Q |
12 |
ttaagctcacgagaacatctcgttgagagtctaacaacgagagtaaaattttcatgtaaccaacaatttttaatgcaacnnnnnnncgatttacctttga |
111 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26675998 |
ttaagctcacgagaacatcttgttgagagtctaacaacgagagtaaaattttcatgtaaccaacaatttttaatgcaacaaaaaaacgatttacctttga |
26676097 |
T |
|
| Q |
112 |
gtggtgttaagccctcttcaatgagtttacgatattgcatgtagcacatgaagccacaagcactagttgtccaaaaaagcacttcagggatattaagttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26676098 |
gtggtgttaagccctcttcaatgagtttacgatattgcatgtagcacatgaagccacaagcactagttgtccaaaaaagcacttcagggatattaagttc |
26676197 |
T |
|
| Q |
212 |
ttgagcagcatccaaagtaaaactcatacaaccatcagaaactatgcaagtaa |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26676198 |
ttgagcagcatccaaagtaaaactcatacaaccatcagaaactatgcaagtaa |
26676250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 26947606 - 26947858
Alignment:
| Q |
12 |
ttaagctcacgagaacatctcgttgagagtctaacaacgagagtaaaattttcatgtaaccaacaatttttaatgcaacnnnnnnncgatttacctttga |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26947606 |
ttaagctcacgagaacatcttgttgagagtctaacaacgagagtaaaattttcatgtaaccaacaatttttaatgcaacaaaaaaacgatttacctttga |
26947705 |
T |
|
| Q |
112 |
gtggtgttaagccctcttcaatgagtttacgatattgcatgtagcacatgaagccacaagcactagttgtccaaaaaagcacttcagggatattaagttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26947706 |
gtggtgttaagccctcttcaatgagtttacgatattgcatgtagcacatgaagccacaagcactagttgtccaaaaaagcacttcagggatattaagttc |
26947805 |
T |
|
| Q |
212 |
ttgagcagcatccaaagtaaaactcatacaaccatcagaaactatgcaagtaa |
264 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26947806 |
ttgagcagcatccaaagtaaaactcatacaaccatcagaaactatgcaagtaa |
26947858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 103 - 248
Target Start/End: Original strand, 26903277 - 26903422
Alignment:
| Q |
103 |
tacctttgagtggtgttaagccctcttcaatgagtttacgatattgcatgtagcacatgaagccacaagcactagttgtccaaaaaagcacttcagggat |
202 |
Q |
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|||||||||||||||||||||||| |||||| | | |||| | |||||||| ||||||||||||||||||||||| |||||||||||||| |||| || |
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| T |
26903277 |
tacctttgagtggtgttaagcccttttcaattaactgacgaaactgcatgtaacacatgaagccacaagcactagtggtccaaaaaagcacagcaggtat |
26903376 |
T |
|
| Q |
203 |
attaagttcttgagcagcatccaaagtaaaactcatacaaccatca |
248 |
Q |
| |
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|||||||||| ||||||||| | ||||||||||||| ||||||| |
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| T |
26903377 |
gttaagttcttcagcagcatctatagtaaaactcataacaccatca |
26903422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 23118092 - 23118120
Alignment:
| Q |
1 |
tatcaactgagttaagctcacgagaacat |
29 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
23118092 |
tatcaactgagttaagctcacgagaacat |
23118120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 36623215 - 36623243
Alignment:
| Q |
1 |
tatcaactgagttaagctcacgagaacat |
29 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
36623215 |
tatcaactgagttaagctcacgagaacat |
36623243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 89393 - 89231
Alignment:
| Q |
100 |
atttacctttgagtggtgttaagccctcttcaatgagtttacgatattgcatgtagcacatgaagccacaagcactagttgtccaaaaaagcacttcagg |
199 |
Q |
| |
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||||||||||||||||||||||||||| ||| || |||| |||||||| ||||||||||| ||||| |||||||||||||||||||| |||| || |
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| T |
89393 |
atttacctttgagtggtgttaagcccttttccataagttggcgatattgtgcatagcacatgaaaccacatgcactagttgtccaaaaaaggacttgtgg |
89294 |
T |
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| Q |
200 |
gatattaagttcttgagcagcatccaaagtaaaactcatacaaccatcagaaactatgcaagt |
262 |
Q |
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||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| |
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| T |
89293 |
gatgttaagttcttgagcagcatccaaagtaaagctcataacaccatcagaaacaatgcaagt |
89231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 35839176 - 35839204
Alignment:
| Q |
1 |
tatcaactgagttaagctcacgagaacat |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
35839176 |
tatcaactgagttaagctcacgagaacat |
35839204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4911641 - 4911669
Alignment:
| Q |
1 |
tatcaactgagttaagctcacgagaacat |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4911641 |
tatcaactgagttaagctcacgagaacat |
4911669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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