View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17420_low_13 (Length: 275)

Name: NF17420_low_13
Description: NF17420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17420_low_13
NF17420_low_13
[»] chr6 (1 HSPs)
chr6 (10-259)||(8383558-8383807)
[»] chr1 (7 HSPs)
chr1 (49-259)||(6767685-6767895)
chr1 (49-259)||(36272111-36272324)
chr1 (139-211)||(17050688-17050760)
chr1 (140-193)||(31389940-31389993)
chr1 (139-211)||(40649413-40649485)
chr1 (139-209)||(12926110-12926180)
chr1 (139-209)||(20794514-20794584)
[»] chr2 (1 HSPs)
chr2 (49-259)||(23462676-23462889)
[»] chr3 (2 HSPs)
chr3 (139-211)||(8436438-8436510)
chr3 (139-211)||(8439983-8440055)
[»] chr7 (1 HSPs)
chr7 (139-208)||(32859456-32859525)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 8383558 - 8383807
Alignment:
Q  10 tggtgttttattgtattctattgttgatgatgaaagtggtggtttttctattatatttgagaatcaatgaaaggttttttgaaagtacgtaatgttatca 109  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8383558 tggtgttttattggattctattgttgatgatgaaagtggttgtttttctattatatttgagaatgaatgaaaggttttttgaaagtacgtaatgttatca 8383657  T
Q  110 atgccatggttgttgttacaaaaactatgtttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaac 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8383658 atgccatggttgttgttacaaaaactatgtttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattgattgccattttggaac 8383757  T
Q  210 ctattataagcgtagaatggaaaggaatttttatgcacaagaaagggatt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8383758 ctattataagcgtagaatggaaaggaatttttatgcacaagaaagggatt 8383807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 49 - 259
Target Start/End: Original strand, 6767685 - 6767895
Alignment:
Q  49 tggtttttctattatatttgagaatcaatgaaaggttttttgaaagtacgta-atgttatcaatgccatggttgttgttacaaaaactatgtttttcaat 147  Q
    |||||||||| |||||||||||||| |||||    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  6767685 tggtttttcttttatatttgagaatgaatgattt-ttttttgaaagcacgtatatgttatcaatgccatggttgttgttacaaaaactatgcttttcaat 6767783  T
Q  148 attaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaacctattataagcgtagaatggaaaggaatttttatgcac 247  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||||||||   |||||||| ||||||||||  ||||||||||| || ||||||||||||    
T  6767784 attaatgatgaattttactttttccatgtcttattatttaaaattggtttttattttggatcctattataatggtagaatggaaggggatttttatgcac 6767883  T
Q  248 aagaaagggatt 259  Q
    ||||||||||||    
T  6767884 aagaaagggatt 6767895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 49 - 259
Target Start/End: Original strand, 36272111 - 36272324
Alignment:
Q  49 tggtttttctattatatttgagaatcaatga--aaggttttttgaaagtacgta-atgttatcaatgccatggttgttgttacaaaaactatgtttttca 145  Q
    |||||||||| |||||||||||||| |||||      ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  36272111 tggtttttcttttatatttgagaatgaatgattttttttttttgaaagcacgtatatgttatcaatgccatggttgttgttacaaaaactatgcttttca 36272210  T
Q  146 atattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaacctattataagcgtagaatggaaaggaatttttatgc 245  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||||||||   |||||||| ||||||||||  ||||||||||| || ||||||||||    
T  36272211 atattaatgatgaattttactttttccatgtcttattatttaaaattggtttttattttggatcctattataatggtagaatggaaggggatttttatgc 36272310  T
Q  246 acaagaaagggatt 259  Q
    ||||||||||||||    
T  36272311 acaagaaagggatt 36272324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 17050760 - 17050688
Alignment:
Q  139 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaacct 211  Q
    |||||||| |||||||||  |||||| ||||| |||||||||||||| ||||||||||  |||||||||||||    
T  17050760 tttttcaacattaatggtagattttagttttttcatgtctaattattgaaaattggttttcattttggaacct 17050688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 31389940 - 31389993
Alignment:
Q  140 ttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattg 193  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||| |||||||    
T  31389940 ttttcaatattaatggtggattttagttttttcatgtctaattattgaaaattg 31389993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 40649413 - 40649485
Alignment:
Q  139 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaacct 211  Q
    |||||||| |||||||||  |||||| ||||| ||||||||| |||| ||||||||||  |||||||||||||    
T  40649413 tttttcaacattaatggtagattttagttttttcatgtctaaatattgaaaattggttttcattttggaacct 40649485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 12926180 - 12926110
Alignment:
Q  139 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaac 209  Q
    |||||||| |||||||||  |||||| ||||| |||||||||| ||| ||||||||||  |||||||||||    
T  12926180 tttttcaacattaatggtagattttagttttttcatgtctaataattgaaaattggttttcattttggaac 12926110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 20794584 - 20794514
Alignment:
Q  139 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaac 209  Q
    |||||||| ||||||| |  |||||| ||||| |||||||||||||| ||||||||||  ||| |||||||    
T  20794584 tttttcaacattaatgatagattttagttttttcatgtctaattattgaaaattggttttcatcttggaac 20794514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 49 - 259
Target Start/End: Complemental strand, 23462889 - 23462676
Alignment:
Q  49 tggtttttctattatatttgagaatcaatga--aaggttttttgaaagtacgta-atgttatcaatgccatggttgttgttacaaaaactatgtttttca 145  Q
    |||||||||| |||||||||||||| |||||      ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||||    
T  23462889 tggtttttcttttatatttgagaatgaatgattttttttttttgaaagcacgtatatgttatcaatgtcatggttgttgttacaaaaactatgcttttca 23462790  T
Q  146 atattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaacctattataagcgtagaatggaaaggaatttttatgc 245  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||||||||   |||||||| ||||||||||  ||||||||||| || |||| |||||    
T  23462789 atattaatgatgaattttactttttccatgtcttattatttaaaattggtttttattttggatcctattataatggtagaatggaaggggatttgtatgc 23462690  T
Q  246 acaagaaagggatt 259  Q
    ||||||||||||||    
T  23462689 acaagaaagggatt 23462676  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 8436438 - 8436510
Alignment:
Q  139 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaacct 211  Q
    |||||||| |||||||||  |||||| ||||| |||||||||||||| ||||||||||  |||||||||||||    
T  8436438 tttttcaacattaatggtagattttagttttttcatgtctaattattaaaaattggttttcattttggaacct 8436510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 8439983 - 8440055
Alignment:
Q  139 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaacct 211  Q
    |||||||| |||||||||  |||||| ||||| |||||||||||||| ||||||||||  |||||||||||||    
T  8439983 tttttcaacattaatggtagattttagttttttcatgtctaattattaaaaattggttttcattttggaacct 8440055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 32859525 - 32859456
Alignment:
Q  139 tttttcaatattaatggtgaattttactttttacatgtctaattatttaaaattggttgccattttggaa 208  Q
    |||||||| |||||||||  |||||| ||||| |||||||||||||| ||||||| ||  ||||||||||    
T  32859525 tttttcaacattaatggtagattttagttttttcatgtctaattattgaaaattgattttcattttggaa 32859456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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