View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17420_low_2 (Length: 510)
Name: NF17420_low_2
Description: NF17420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17420_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 265
Target Start/End: Original strand, 11299888 - 11300144
Alignment:
| Q |
10 |
ccaagaatattttcacatgtaagatattacaaaaatgtttcatgtacatccaattttccctacacccacgcaagtacgttgtttaatcacatagaaaatt |
109 |
Q |
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| T |
11299888 |
ccaataatattttcacatgtaagatattacaaaaatgtttcatgtacatccaattttccctacacctacgcaagtacgttgtttaatcacattgaaaatt |
11299987 |
T |
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| Q |
110 |
atggttaatatgtaattgaattaatcacaattttgaccgtgaatttaattaaaatatctatccaactaaatt-aaaacatatttgaatgtgacgccggtg |
208 |
Q |
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| T |
11299988 |
gtggttaatatgtaattgaattaatcacaattttgaccgtgaatttaattaaaacatctatccaactaaattaaaaacatatttgaatgtgacgccggtg |
11300087 |
T |
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| Q |
209 |
tagnnnnnnntatgagcctgaatacactatagccccaattcttcttatcgaatgtgt |
265 |
Q |
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| T |
11300088 |
taggaaaaaatatgagcctgaatacactatagccccaattcttcaaatcgaatgtgt |
11300144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 263 - 493
Target Start/End: Original strand, 11300197 - 11300427
Alignment:
| Q |
263 |
tgttattacattgaactaagtcatttttaaattattatatgtgtcaatgtttcgtttctatgttgtatctggtgtcatggttttgtaagtcttaatgaat |
362 |
Q |
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| T |
11300197 |
tgttattacaatgaactaagtcattttaaaattattatccgtgtcaatgtttcgtttctatgtcgtatccggtgtcatggttttgtaagtcttactgaat |
11300296 |
T |
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| Q |
363 |
atcattaatattgtcgaaaagaatagtctcttcggcagaaatcaaaaccagataatattaagtattagtaactcgtgttttttgtgaaaacaatttcgta |
462 |
Q |
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| T |
11300297 |
atcattaatattgtcgaaaagaatcgtctcttcggcagaaatcaaaaccagataatattaagtattagtaacttgtgtttttggtgaaaacaatttcgta |
11300396 |
T |
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| Q |
463 |
accaaaaggtttgaaacatggaaacggacac |
493 |
Q |
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| T |
11300397 |
acaaaaaggtttgaaacatggacacggacac |
11300427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 19297003 - 19297081
Alignment:
| Q |
105 |
aaattatggttaat-atgtaattgaattaatcacaattttgaccgtgaatttaattaaaatatctatccaactaaattaa |
183 |
Q |
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| T |
19297003 |
aaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattgaatt-aaccatctattcaactaaattaa |
19297081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 3750634 - 3750691
Alignment:
| Q |
105 |
aaattatggttaata-tgtaattgaattaatcacaattttgaccgtgaatttaattaa |
161 |
Q |
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| T |
3750634 |
aaattgtggttaataatgtaattgaattaaccacaactttgaccttgaattgaattaa |
3750691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 31120298 - 31120354
Alignment:
| Q |
105 |
aaattatggttaatatgtaattgaattaatcacaattttgaccgtgaatttaattaa |
161 |
Q |
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| T |
31120298 |
aaattgtgattaatatataattgaatttatcacaattttaacagtgaattgaattaa |
31120354 |
T |
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