View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17420_low_3 (Length: 445)
Name: NF17420_low_3
Description: NF17420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17420_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 11934833 - 11934418
Alignment:
| Q |
13 |
aatattaacttgaaattaacaaagtcgccatctttctaattctttctatgcggaagagtagggatgctttgttcattcctaaagaaattgtcaggatcaa |
112 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11934833 |
aatattaacttgaaattaacaaagtcaccatctttctaattctttctatgaggaagagtagggatgctttgttcattcctaaagaaattgtcaggatcaa |
11934734 |
T |
|
| Q |
113 |
ctttagtcttaatttccaccaatctatcaaaattatccttaaaatactcaactccataaactcttccttcagcataactattcttaccattatgattaat |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11934733 |
cttttgtcttaatttccaccaatctatcaaaattatccttaaaatactcaactccataaactcttccttcagcataactattcttaccattatgattaat |
11934634 |
T |
|
| Q |
213 |
tcccaaatcaagatccttataattnnnnnnngcctctcttggattcttggacacaaatggagtcatatatttgtgaagttttctagtcaaacctatgtaa |
312 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11934633 |
tcccaaatcaagatccttataattaaaaaaagcctctcttggattcttggacacaaaaggagtcatatatctgtgaagttttctagtcaaacctatgtaa |
11934534 |
T |
|
| Q |
313 |
tgatcagcaacatctttacctgctttgttccaatttgcttgatattgaaccttccataaatttccagctctatgagggaaaggtgtatctgttgatgaaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11934533 |
tgatcagcaacatctttacctgctttgttccaatttgcttgatattgaaccttccataaatttccagctctatgagggaaaggtgtatctgttgatgaaa |
11934434 |
T |
|
| Q |
413 |
tctcagccatttttcc |
428 |
Q |
| |
|
|||||||||||||||| |
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| T |
11934433 |
tctcagccatttttcc |
11934418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 11948053 - 11947639
Alignment:
| Q |
13 |
aatattaacttgaaattaacaaagtcgccatctttctaattctttctatgcggaagagtagggatgctttgttcattcctaaagaaattgtcaggatcaa |
112 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11948053 |
aatattaactagaaattaacaa-gtcttcatctttctaattcttcctatgaggaagagtagggatgctttgttcattcctaaagaaattgtcaggatcaa |
11947955 |
T |
|
| Q |
113 |
ctttagtcttaatttccaccaatctatcaaaattatccttaaaatactcaactccataaactcttccttcagcataactattcttaccattatgattaat |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11947954 |
cttttgtcttaatttccaccaatctatcaaaattatccttaaaatactcaactccataaactcttccttcagcataactattcttaccattatgattaat |
11947855 |
T |
|
| Q |
213 |
tcccaaatcaagatccttataattnnnnnnngcctctcttggattcttggacacaaatggagtcatatatttgtgaagttttctagtcaaacctatgtaa |
312 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11947854 |
tcccaaatcaagatccttataattaaaaaaagcctctcttggattcttggacacaaaaggagtcatatatctgtgaagttttctagtcaaacctatgtaa |
11947755 |
T |
|
| Q |
313 |
tgatcagcaacatctttacctgctttgttccaatttgcttgatattgaaccttccataaatttccagctctatgagggaaaggtgtatctgttgatgaaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11947754 |
tgatcagcaacatctttacctgctttgttccaatttgcttgatattgaaccttccataaatttccagctctatgagggaaaggtgtatctgttgatgaaa |
11947655 |
T |
|
| Q |
413 |
tctcagccatttttcc |
428 |
Q |
| |
|
|||||||||||||||| |
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| T |
11947654 |
tctcagccatttttcc |
11947639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 76 - 428
Target Start/End: Complemental strand, 11918587 - 11918232
Alignment:
| Q |
76 |
atgctttgttcattcctaaagaaattgtcaggatcaactttagtcttaatttccaccaatctatcaaaattatccttaaaatactcaactccataaactc |
175 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||| ||||||||||||||| || | || ||||||||| | |
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|
| T |
11918587 |
atgctttgttcattcctaaagaaattactaggatcaaccttagtcttaatttccactaacctatgaaaattatccttaaagtattgaattccataaacac |
11918488 |
T |
|
| Q |
176 |
ttccttcagcataactattctta---ccattatgattaattcccaaatcaagatccttataattnnnnnnngcctctcttggattcttggacacaaatgg |
272 |
Q |
| |
|
| |||| | || ||| | | |||| ||||||||| || ||||| | ||||| ||||| || | ||||||||||||||||||||| || |
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|
| T |
11918487 |
taccttgtgagtagctactaaaaaaaccatgatgattaatacctaaatctaagtccttgtaattaagataagcttgtcttggattcttggacacaaaagg |
11918388 |
T |
|
| Q |
273 |
agtcatatatttgtgaagttttctagtcaaacctatgtaatgatcagcaacatctttacctgctttgttccaatttgcttgatattgaaccttccataaa |
372 |
Q |
| |
|
||||||||| || | ||||| |||||| | | ||| | || | | || |||| ||| | | |||||||||||||||||||||| |||||||||| |
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|
| T |
11918387 |
agtcatatacttataaagttctctagtgacatttatatgataaaatgttacctcttccccttcctcattccaatttgcttgatattgaatcttccataaa |
11918288 |
T |
|
| Q |
373 |
tttccagctctatgagggaaaggtgtatctgttgatgaaatctcagccatttttcc |
428 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||| |||||||||| |||||||||| |
|
|
| T |
11918287 |
tttccagctctatgaggtaaaggagtttctgttggtgaaatctcatccatttttcc |
11918232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 11822236 - 11822114
Alignment:
| Q |
79 |
ctttgttcattcctaaagaaattgtcaggatcaactttagtcttaatttccaccaatctatcaaaattatccttaaaatactcaactccataaactcttc |
178 |
Q |
| |
|
|||||||||||||| || || || ||||||||||| ||||||||| | ||||| ||||||||||||| ||||| |||| | ||||||||| | |
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|
| T |
11822236 |
ctttgttcattcctgaaaaagttatcaggatcaacagcagtcttaatcttaaccaacctatcaaaattattattaaagtacttagtgccataaacttcac |
11822137 |
T |
|
| Q |
179 |
cttcagcataactattcttacca |
201 |
Q |
| |
|
|||| ||||||||||||||||| |
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|
| T |
11822136 |
cttcttcataactattcttacca |
11822114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 11786182 - 11786238
Alignment:
| Q |
103 |
tcaggatcaactttagtcttaatttccaccaatctatcaaaattatccttaaaatac |
159 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| |||| |||||||| || |||||| |
|
|
| T |
11786182 |
tcaggatccactttagtcttaattttcaccaacctattgaaattatctttgaaatac |
11786238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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