View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17420_low_4 (Length: 443)
Name: NF17420_low_4
Description: NF17420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17420_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 242 - 429
Target Start/End: Original strand, 41299277 - 41299464
Alignment:
| Q |
242 |
ggtggaatgaagatgtttcaactgatggaaaatggtgttatatagtattttgggtggtgggaaaagaaaaaacaaggtggagtttgttgaagaaaagact |
341 |
Q |
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| T |
41299277 |
ggtggaatgaagatgtttcaactgatggaaaatggtgttatatagtattttgggtggtgggaaaagaaaaaacaaggtggagtttgttgaagaaaagact |
41299376 |
T |
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| Q |
342 |
aattgctgcttgtcctacttgttcttctgcttctggattttcttatttctgctctgatttgcagaatcaaaagcctcctgatgttttt |
429 |
Q |
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| T |
41299377 |
aattgctgcttgtcctacttgttcttctgcttctggattttcttatttctgctctgatttgcagaatcaaaagcctcctgatgttttt |
41299464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 41299046 - 41299193
Alignment:
| Q |
11 |
cagagaaagaaggtgaaactaccatcataacggttaactgccccgacaaaactggtcttggttctgatttatgtcgcatcattctcttctttcatctcac |
110 |
Q |
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| T |
41299046 |
cagagaaagaaggtgaaactaccatcataacggttaactgccccgacaaaactggtcttggttctgatttatgtcgcatcattctcctctttcatctcac |
41299145 |
T |
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| Q |
111 |
cattctccgagcaggtaagtaatacatattcaaaattcgttctttctc |
158 |
Q |
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| T |
41299146 |
cattctccgagcaggtaagtaatacatattcaaaattcgttctttctc |
41299193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 41299222 - 41299258
Alignment:
| Q |
187 |
gtatccgggtctgtgtccttttgagatactgagaatg |
223 |
Q |
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| T |
41299222 |
gtatctgggtctgtgtccttttgagatactgagaatg |
41299258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 335
Target Start/End: Complemental strand, 27664944 - 27664856
Alignment:
| Q |
247 |
aatgaagatgtttcaactgatggaaaatggtgttatatagtattttgggtggtgggaaaagaaaaaacaaggtggagtttgttgaagaa |
335 |
Q |
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| T |
27664944 |
aatgaagacgtgtcaactgatggaaagtggtgttacatagttttttgggtggttgggaaacagaagacaaggtggagtttgttgaagaa |
27664856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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