View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17420_low_5 (Length: 435)
Name: NF17420_low_5
Description: NF17420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17420_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 246 - 418
Target Start/End: Complemental strand, 26759431 - 26759258
Alignment:
| Q |
246 |
agagacttacacacactagaaaatatcaacaccatcacgataataatctacctttaactcacttgattacctctatgta-gcatgagctcgatcatatgg |
344 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
26759431 |
agagtcttacacacactagaaaatatcaacaccatcacgataataatctacctttaactcacttgattacctctatgtaggcatgagctcgatcttatgg |
26759332 |
T |
|
| Q |
345 |
accaaaatacttggtatcaagtatagcgtcgagtccagaggatgaaggcacatttaatgagtgaatgcactctg |
418 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
26759331 |
accaaaatacttggtatcaagcatagcgccgagtccagaggatgaaggcacgtttaatgagtgaaggcactctg |
26759258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 26759666 - 26759500
Alignment:
| Q |
10 |
aagaatatggagggataatccatggaatgaatggtaaaataattataaataaaatacttgttatgtttattttattactgttggatcatgatggctataa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26759666 |
aagaaaatggagggataatccatggaataaatggtaaaataattataaataacatacttgttatgtttattttattactgttggatcatgatggctataa |
26759567 |
T |
|
| Q |
110 |
cggattgttatgttgggctacaagcaatcactcaaagagaactttagaccacgtcttttttgaaaac |
176 |
Q |
| |
|
| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| || ||||| |
|
|
| T |
26759566 |
cagattgttatgttgggctacgagcaattactcaaagagaactttagagcacgtctttatttaaaac |
26759500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University