View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17420_low_7 (Length: 409)

Name: NF17420_low_7

Description: NF17420

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17420_low_7

[»] chr1 (1 HSPs)

Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 353; E-Value: 0

Query Start/End: Original strand, 18 - 409

Target Start/End: Original strand, 51694782 - 51695174

Alignment:

Q	18	ggaaccaccgcattccgattaccctccttaatcccatttgaagcttcttcttacttctcctctattgccaccgccgccactaaaaccctttcaccttttt	117	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51694782	ggaaccactgcattccgattacccttcgtaaacccatttgaagcttcttcttacttctcctctattgccgccgccgccactaaaaccctttcaccttttt	51694881	T

Q	118	ctgtaaagttttcgaatttcttagcatccattactcttttaagtgttttgtggattccttttgttgcgttgaagttaagttcggagaatggccgcgtggt	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	51694882	ctgtaaagttttcaaatttcttagcatccattactcttttaagtgttttgtggattccttttgttgcgttgaagttaagttcggagaatggctgcgtggt	51694981	T

Q	218	ctagtagaaagttgcttagagacgtttttctcaaaagggctgttttcaatcgaattccaaccgtcagagctttttcttcttcacctcaaaatgctcctaa	317	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51694982	ctagtagaaagttgcttagagacgtttttctcaaaagggctgttttcaatcgaattccaaccgtcagagctttttcttcttcacctcaaaatgctcctaa	51695081	T

Q	318	gattggttactattccaagaaagtacgcttttttatttccttttctcacattatacattctattgtattgttcac-tttgtttttgggatttt	409	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51695082	gattggttactattccaagaaagtacgcttttttatttccttttctcacattatacattctattgtattgtttacttttgtttttgggatttt	51695174	T

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