View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17420_low_9 (Length: 372)
Name: NF17420_low_9
Description: NF17420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17420_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 367
Target Start/End: Original strand, 31169856 - 31170203
Alignment:
| Q |
20 |
agagccacattagtactcaagacatgcgttttattagaagctacaacttctatcttttagaaaccacggtgaaaataatcttggaacgcgagaattgcaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31169856 |
agagccacattagtactcaagacatgcgttttattagaagctacaacttctatcttttagaaaccacggtgaaaataatcttggaacgcgagaattgcaa |
31169955 |
T |
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| Q |
120 |
gttaaatgtagttcgaaagatacacttattcaaaatttaggaaaaaattatgtaaaacctccacatcaaacaatgaagggaatacaaagagtcaaaggac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31169956 |
gttaaatgtagttcgaaagatacacttattcaaaatttaggaaaaaattatgtaaaacctccacatcaaacaatgaagggaatacaaagagtcaaaggac |
31170055 |
T |
|
| Q |
220 |
aaaacagaattggactccttgccacatattcttaatctgaggtaaagtggaaattttcaaatcaataccaacgtaaattagtggaaaatttcaaatcaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31170056 |
aaaacagaattggactccttgccacatattcttaatctgaggtaaagtggaaattttcaaatcaataccaacgtaaattagtggaaaatttcaaatcaat |
31170155 |
T |
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| Q |
320 |
accaacaccctttcataccagcagcagcagtttttcttgatgatgtcc |
367 |
Q |
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|| |||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
31170156 |
actaacaccctttcataccagcagcagcagtttttcttggtggtgtcc |
31170203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 31151566 - 31151892
Alignment:
| Q |
20 |
agagccacattagtactcaagacatgcgttttattagaagctacaacttctatcttttagaaaccacggtgaaaataatcttggaacgcgagaattgcaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31151566 |
agagccacattagtactcaagacatgcgttttattagaagctacaacttctatcttttagaaaccacggtgaaaataatcttggaactcgagaattgcaa |
31151665 |
T |
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| Q |
120 |
gttaaatgtagttcgaaagatacacttattcaaaatttaggaaaaaattatgtaaaacctccacatcaaacaatgaagggaatacaaagagtcaaaggac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31151666 |
gttaaatgtagttcgaaagatacacttattcaaaatttaggaaaaaattatgtaaaacctccacatcaaacaatgaagggaatacaaagagtcaaaggac |
31151765 |
T |
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| Q |
220 |
aaaacagaattggactccttgccacatattcttaatctgaggtaaagtggaaattttcaaatcaataccaacgtaaattagtggaaaatttcaaatcaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31151766 |
aaaacagaattggactccttgccacatattcttaatctgaggtaaagtggaaattttcaaatcaataccaacgtaaattagtggaaaatttcaaatcaat |
31151865 |
T |
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| Q |
320 |
accaacaccctttcataccagcagcag |
346 |
Q |
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||||||||||||||||||||||||||| |
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| T |
31151866 |
accaacaccctttcataccagcagcag |
31151892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 31067434 - 31067479
Alignment:
| Q |
299 |
agtggaaaatttcaaatcaataccaacaccctttcataccagcagc |
344 |
Q |
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|||| ||||||||| |||| |||||||||||||||||||||||||| |
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| T |
31067434 |
agtgaaaaatttcacatcagtaccaacaccctttcataccagcagc |
31067479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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