View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17421_high_11 (Length: 413)
Name: NF17421_high_11
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_high_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 657757 - 657352
Alignment:
| Q |
9 |
cgaagaatatcacaacggttcaagataatcaaaatgaaatgtgtttttcgatctatgaaggagatgaacaaagtgttaacagaaacactaaactaggaga |
108 |
Q |
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| T |
657757 |
cgaagaatatcacaacggttcaagataatcaaaatgaaatgtgtttgttgatctatgaaggagatgaacaaagtgttaacagaaacactaaactaggaga |
657658 |
T |
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| Q |
109 |
attagaactc-ttggcattcctcctgctaaatgtggtgttcccactatcactcttcgcttcgatataagttcagatggtgccttaactatttctgcgaca |
207 |
Q |
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| T |
657657 |
attagaactccttggcattcctcctgctaaatgtggtgttcccactatcactcttggcttcgatataagttcagatggtgccttaactatttctgcaaca |
657558 |
T |
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| Q |
208 |
gagagctcttctggaacaagcaacaaaattaccattgaaaatttcaagggaagattttctgaagaggagatcgagaagatgattaaccaagcttctaagt |
307 |
Q |
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| T |
657557 |
gagagctcttctggaacaagcaacaaaattaccattgaaaatttcaagggaagattttctgaagaggagatcgagaagatgattaaccaagctgctaagt |
657458 |
T |
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| Q |
308 |
acaaatctgatgatgagaaacaccagaagaataaggaggcagcaaatgagcttattgaatatgccactgtcatgaagcaaacaattaatcctgagctgtc |
407 |
Q |
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| T |
657457 |
acaaatctgatgatgagaaacaccagaagaataaggaggcagcaaatgagcttattgaatatgccactgccatgaagcaaacaattaatcctgagctgtc |
657358 |
T |
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| Q |
408 |
agttaa |
413 |
Q |
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| T |
657357 |
agttaa |
657352 |
T |
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