View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17421_high_14 (Length: 339)
Name: NF17421_high_14
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 51214856 - 51214534
Alignment:
| Q |
1 |
tgagataatgcgacagctgccgttgtgagagagaaaaatacctgaaaagaaattaaatgtttaatgctaaaagaatgtgatgagctcagagttcaaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214856 |
tgagataatgcgacagctgccgttgtgagagagaaaaatacctgaaaagaaattaaatgtttaatgctaaaagaatgtgatgagctcagagttcaaccaa |
51214757 |
T |
|
| Q |
101 |
agagcactatatctgaaatggcctccgagttgggaccgtaacttacttgaaaaactcctgacatcgaagttttgccattctcaataagttgggcgccagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214756 |
agagcactatatctgaaatggcctccgagttgggaccgtaacttacttgaaaaactcctgacatcgaagttttgccattctcaataagttgggcgccagc |
51214657 |
T |
|
| Q |
201 |
ataaaaactgattgcatagacacaaaacagaaagaagattgctaacccaaaaccagttccactgactaaaccctgcctttttcctgtctggaatggtact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214656 |
ataaaaactgattgcatagacacaaaacagaaagaagattgctaacccaaaaccagttccactgactaaaccctgcctttttcctgtctggaatggtact |
51214557 |
T |
|
| Q |
301 |
acacatttcttctggtataattc |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
51214556 |
acacatttcttctggtataattc |
51214534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 139 - 320
Target Start/End: Original strand, 49735391 - 49735572
Alignment:
| Q |
139 |
taacttacttgaaaaactcctgacatcgaagttttgccattctcaataagttgggcgccagcataaaaactgattgcatagacacaaaacagaaagaaga |
238 |
Q |
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| T |
49735391 |
taacttacttgaaaaacatctgatattgaggttttgccattcttaacaagttgtgctccagcataaaaactgcatgcataaacacagaacataaagaaga |
49735490 |
T |
|
| Q |
239 |
ttgctaacccaaaaccagttccactgactaaaccctgcctttttcctgtctggaatggtactacacatttcttctggtataa |
320 |
Q |
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||| ||| ||||||||| |||||| |||| ||||||||||||||||||||| | |||||||||||||||||| |||||||| |
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| T |
49735491 |
ttgataagccaaaaccaactccactaactataccctgcctttttcctgtctgtactggtactacacatttcttttggtataa |
49735572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 49735137 - 49735215
Alignment:
| Q |
9 |
tgcgacagctgccgttgtgagagagaaaaatacctgaaaa----gaaattaaatgtttaatgctaaaagaatgtgatga |
83 |
Q |
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|||||| |||||| |||||||||||||||| ||||||||| ||||||||||| || |||||| || |||||||||| |
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| T |
49735137 |
tgcgacggctgccattgtgagagagaaaaacacctgaaaattaggaaattaaatgcttgatgctagaacaatgtgatga |
49735215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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