View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17421_high_18 (Length: 294)
Name: NF17421_high_18
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 5726747 - 5727009
Alignment:
| Q |
13 |
aactcttcatcattgaattaggaattcaatactcttcccagccaaatcacctacgggtagcaagtttatcaactttacccccaccaaaatcacaagctga |
112 |
Q |
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| T |
5726747 |
aactcttcatcattgaattaggaattcaatactcttccctgccaaatcacctacgggtagcaagtttatcagctttacccccaccaaaatcacaagctga |
5726846 |
T |
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| Q |
113 |
atgggctgccatatcctacttagtgaccattaattaactaacaggagccttaattttttgaaaaaacataacttgtcatttatataattggatcacaagg |
212 |
Q |
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| T |
5726847 |
atgggctgccatatcctgcttagtgaccattaattaactaacaggagccttaattttttgaaaaaacataacttgtcatttatataattggatcacaagg |
5726946 |
T |
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| Q |
213 |
agaattc-aagatgaaatgtgcagttccttaaattgtagttatagggtggacggggcgacgac |
274 |
Q |
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| T |
5726947 |
agaattcaaagatgaaatgtgcagttccttaaattgtagttatagggtggacggggcgacgac |
5727009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 46119702 - 46119957
Alignment:
| Q |
13 |
aactcttcatcattgaattaggaattcaatactcttcccagccaaatcacctacgggta----------gcaagtttatcaactttacccccaccaaaat |
102 |
Q |
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| T |
46119702 |
aactcttcatcattgaattgggaattcaatactcttccctgccaaatcacctgccggtatttagctagagcaagtttctcagctttacccccaccaaaat |
46119801 |
T |
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| Q |
103 |
cacaagctgaatgggctgccatatcctac-----ttagtgaccattaattaactaacaggagccttaattttttgaaaaaacataacttgtcatttatat |
197 |
Q |
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| T |
46119802 |
cacaagctgaatgggctgccatatcctgcacatgtcagtgaccattaattaactagcaggagccttaaatttctgacaaaacataaattttcatttatat |
46119901 |
T |
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| Q |
198 |
aattggatcacaaggagaattcaagatgaaatgtgcagttccttaaattgtagtta |
253 |
Q |
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| T |
46119902 |
aattggatcagaaggagaattcaagatgaaatgtgcagttccttaaattgcagtta |
46119957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 34949072 - 34949207
Alignment:
| Q |
13 |
aactcttcatcattgaattaggaattcaatactcttcccagccaaatcacctacgggtagcaagtttatcaactttacccccaccaaaatcacaagctga |
112 |
Q |
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| T |
34949072 |
aactcttgatcattgaattgggaattcaatactcttccctgccaaatcacctgccggtagcaaatttatcagctttacccccaccaaaatcacaagctga |
34949171 |
T |
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| Q |
113 |
atgggctgccatatcctacttagtgaccattaatta |
148 |
Q |
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| T |
34949172 |
atgggctgccatatcctgctcagtgaccattaatta |
34949207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 13779877 - 13779913
Alignment:
| Q |
93 |
ccaccaaaatcacaagctgaatgggctgccatatcct |
129 |
Q |
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| T |
13779877 |
ccaccaaaatcacaggctgaatgggctgccatatcct |
13779913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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