View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17421_high_20 (Length: 282)
Name: NF17421_high_20
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_high_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 9078089 - 9078243
Alignment:
| Q |
2 |
taggttaaagtataatccaaaaccaaattatttggaataattgaatcaaataattatttgggattaatataatcatacctgctgtgagtatttacttaat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9078089 |
taggttaaagtataatccaaaaccaaattatttggaataattgaatcaaataattatttgggattaatataatcatacctgctgtgagtatgtacttaat |
9078188 |
T |
|
| Q |
102 |
ccaaaatctgaaactttaagaacaccatttgtgtctaaaagaagattctctggct |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9078189 |
ccaaaatctgaaactttaagaacaccatttgtatctaaaagaagattctctggct |
9078243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 156
Target Start/End: Original strand, 9086868 - 9087020
Alignment:
| Q |
4 |
ggttaaagtataatccaaaaccaaattatttggaataattgaatcaaataattatttgggattaatataatcatacctgctgtgagtatttacttaatcc |
103 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
9086868 |
ggttaaagtataatcgaaaaccaaattatttggaataatggaatcaaataattatttgggattaatattatcatacctgctgtgagtatgtacttaatcc |
9086967 |
T |
|
| Q |
104 |
aaaatctgaaactttaagaacaccatttgtgtctaaaagaagattctctggct |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9086968 |
aaaatctgaaactttaagaacaccatttgtatctaaaagaagattctctggct |
9087020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 9078292 - 9078395
Alignment:
| Q |
166 |
gagtaaaaatagtttattcatgttcaaaactaactaattattaattaaattacagaggaaataagaggattaagaaagttgttagaccttcaaatctctg |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9078292 |
gagtaaaaatagtttattcatgttcaaaactaacaaattattaattaaattagagaggaaataagaggattaaggaagttgttagaccttcaaatctctg |
9078391 |
T |
|
| Q |
266 |
tgat |
269 |
Q |
| |
|
|||| |
|
|
| T |
9078392 |
tgat |
9078395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 9087069 - 9087172
Alignment:
| Q |
166 |
gagtaaaaatagtttattcatgttcaaaactaactaattattaattaaattacagaggaaataagaggattaagaaagttgttagaccttcaaatctctg |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9087069 |
gagtaaaaatagtttattcatgttcaaaactaacaaattattaattaaattagagaggaaataagaggattaaggaagttgttagaccttcaaatctctg |
9087168 |
T |
|
| Q |
266 |
tgat |
269 |
Q |
| |
|
|||| |
|
|
| T |
9087169 |
tgat |
9087172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University