View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17421_high_21 (Length: 281)
Name: NF17421_high_21
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 28922364 - 28922625
Alignment:
| Q |
1 |
aaaaaatatcacaattagattataaataagtgaaagtgatcctcttgaacataataaaatattaaaaggatatattatattgaacttggactgtgatatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
28922364 |
aaaaaatatcacaattagattataaataagtgaaagtgatcctcttgagcataataaaatattaaa-ggatatattatattgaaatcagactgtgatatc |
28922462 |
T |
|
| Q |
101 |
ggagtgcatcgttgagaaatggaaaacaaacaacattaaaaggaagaatgcaagaagcagcacatgaatgccattattaacaccagccagtatgtttggc |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28922463 |
ggagtgcatcactgagaaatggaaaacaaacaacattaaaaggaagaatgcaagaagcagcacatgaatgccattattaacaccagccagtatgtttggc |
28922562 |
T |
|
| Q |
201 |
ttctaagtcgtcactgtagacagaatcttaattcaatgacaaatcacagcatgacaatgtgaa |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28922563 |
ttctaagtcgtcactgtagacagaatcttaatgcaatgacaaatcacagcatgacaatgtgaa |
28922625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 4 - 263
Target Start/End: Original strand, 28912907 - 28913164
Alignment:
| Q |
4 |
aaatatcacaattagattataaataagtgaaagtgatcctcttgaacataataaaatattaaaaggatatattatattgaacttggactgtgatatcgga |
103 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28912907 |
aaatatcactatta-atcataaataagtgaaagtgatcctcttgaaaataataaaaacattaaaggatatattatattgaactcggactgtgatatcgga |
28913005 |
T |
|
| Q |
104 |
gtgcatcgttgagaaatggaaaacaaacaacattaaaaggaagaatgcaagaagcagcacatgaatgccattattaacaccagccagtatgtttggcttc |
203 |
Q |
| |
|
|| ||||| | |||||||||| ||||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
28913006 |
gtacatcggtaggaaatggaaat-aaacaacattaaaaggaagaaagcaagaagcaacacatcaatggggttattaacaccagccaatatatttggcttc |
28913104 |
T |
|
| Q |
204 |
taagtcgtcactgtagacagaatcttaattcaatgacaaatcacagcatgacaatgtgaa |
263 |
Q |
| |
|
||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
28913105 |
taagtcgtcactgtaaagagaatctcaatgcaatgacaaatcacagcatgacaatgtgaa |
28913164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 28888805 - 28888845
Alignment:
| Q |
217 |
tagacagaatcttaattcaatgacaaatcacagcatgacaa |
257 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
28888805 |
tagaaagaatctcaatgcaatgacaaatcacagcatgacaa |
28888845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University