View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17421_high_4 (Length: 595)
Name: NF17421_high_4
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_high_4 |
 | |
|
| [»] scaffold0264 (2 HSPs) |
| | |
|
| [»] scaffold0074 (2 HSPs) |
| | |
|
| [»] scaffold0007 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 489; Significance: 0; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 13 - 577
Target Start/End: Original strand, 18996996 - 18997560
Alignment:
| Q |
13 |
ataattcttcccctaacattactcaattttgaccatggaattgctctattgattacatcctttagacaagtagcgcaatcctcactagacaaatctcgcg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
18996996 |
ataattcttcccctaacattactcaattttgaccatggaattgctctattgatcacatcctttagacaagaagtgcaatcctcactagacaaatctcgcg |
18997095 |
T |
|
| Q |
113 |
tacattgtccaagactatacaagttttgttcatcatacagttttaatgaattagtcatatatctttcaacactgtaccccgtttcatatgcaagtttgga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18997096 |
tacattgtccaagactatacaagttttgttcatcatacagttttaatgaattagtcatatatctttcaacactgtaccccgtttcatatgcaagtttgga |
18997195 |
T |
|
| Q |
213 |
aaactgattcaataatgtcataatgtacaagttttggtctgtataggtgatatttatatctctatacataggacttgtatcaacggtggaaaagaaatag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18997196 |
aaactgattcaataatgtcataatgtacaagttttggtctgtataggtgatatttatatctctatacataggacttgtatcaacagtggaaaagaaatag |
18997295 |
T |
|
| Q |
313 |
ttgtaggagtaacgaacattacactcgtcgtaataaatgactgcttgtttggataaagggcaatctaaggacagtttttgagttgcatgaactatgcatt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18997296 |
ttgtaggagtaacgaacattacactcgtcgtaataaatgactgcttgtttggataaagggcaatctaaggacagttttttagttgcatgaactatgcatt |
18997395 |
T |
|
| Q |
413 |
caacacagatttgagaggagacgtcacccctgcacatgaacaatccatagacagaatcagttcgatttacactagtgactgtggtgttgtagaattcatt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
18997396 |
caacacagatttgagaggagacgtcacccctgcacatgaacaatccatagacagaatcagttcgatttacaccggtgactgtggtgttgtagaattcggt |
18997495 |
T |
|
| Q |
513 |
gttgcctatggcgtttgatgacaagatagaaaggagggtcctggtattgatttggtaggtgctat |
577 |
Q |
| |
|
|||| | |||| | ||||||||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
18997496 |
gttgacggtggcttctgatgacaatgaagagaggagtgtcctggtattgatttggtaggtgctat |
18997560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 297 - 551
Target Start/End: Original strand, 20238397 - 20238651
Alignment:
| Q |
297 |
ggtggaaaagaaatagttgtaggagtaacgaacattacactcgtcgtaataaatgactgcttgtttggataaagggcaatctaaggacagtttttgagtt |
396 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||| |||||||||||||| || |||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
20238397 |
ggtggaaaagaaatagttatctgagtaacgaacaagacaatcgtcgtaataaatcacggcttgttttgataaagggcagtctaaggacaatttttgagta |
20238496 |
T |
|
| Q |
397 |
gcatgaactatgcattcaacacagatttgagaggagacgtcacccctgcacatgaacaatccatagacagaatcagttcgatttacactagtgactgtgg |
496 |
Q |
| |
|
|||| ||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20238497 |
gcattaactacgcattcatgacagagttgagagtagacgtcacccctgcacatgaacaatccatagacagaatcagtgggatttacactagtgactgtgg |
20238596 |
T |
|
| Q |
497 |
tgttgtagaattcattgttgcctatggcgtttgatgacaagatagaaaggagggt |
551 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||||||||| |||| || ||||| |
|
|
| T |
20238597 |
tgttgtagaattcagtgttgtctatggcttttgatgacaaggtagagagaagggt |
20238651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 297 - 551
Target Start/End: Original strand, 22132381 - 22132635
Alignment:
| Q |
297 |
ggtggaaaagaaatagttgtaggagtaacgaacattacactcgtcgtaataaatgactgcttgtttggataaagggcaatctaaggacagtttttgagtt |
396 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||| |||||||||||||| || |||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
22132381 |
ggtggaaaagaaatagttatctgagtaacgaacaagacaatcgtcgtaataaatcacggcttgttttgataaagggcagtctaaggacaatttttgagta |
22132480 |
T |
|
| Q |
397 |
gcatgaactatgcattcaacacagatttgagaggagacgtcacccctgcacatgaacaatccatagacagaatcagttcgatttacactagtgactgtgg |
496 |
Q |
| |
|
|||| ||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22132481 |
gcattaactacgcattcatgacagagttgagagtagacgtcacccctgcacatgaacaatccatagacagaatcagtgggatttacactagtgactgtgg |
22132580 |
T |
|
| Q |
497 |
tgttgtagaattcattgttgcctatggcgtttgatgacaagatagaaaggagggt |
551 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||||||||| |||| || ||||| |
|
|
| T |
22132581 |
tgttgtagaattcagtgttgtctatggcttttgatgacaaggtagagagaagggt |
22132635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 22205698 - 22205407
Alignment:
| Q |
10 |
tagataattcttcccctaacattactcaattttgaccatggaattgctctattgattacatcctttagacaagtagcgcaatcctcactagacaaatctc |
109 |
Q |
| |
|
|||||||||||||||| |||| ||| || |||||||||||||||| | || |||| |||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22205698 |
tagataattcttcccccaacactaccgaaatttgaccatggaattgatgtagtgatcacattatttagacaagtagcgcaaccctcactagacaaatctc |
22205599 |
T |
|
| Q |
110 |
gcgtacattgtccaagactatacaagttttgttcatcatacagttttaatgaattagtcatatatctttcaacactgtaccccgtttcatatgcaagttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||||||||| |||||| ||| || |||| ||||||| |
|
|
| T |
22205598 |
gcgtacattgtccaagactatacaaggtttgtacatcattcagttttaatgaattagtcttatatctttcatcactgtcccctgtatcattcgcaagttg |
22205499 |
T |
|
| Q |
210 |
ggaaaactgattcaataatgtcataatgtacaagttttggtctgt------ataggtgatatttatatctctatacataggacttgtatcaa |
295 |
Q |
| |
|
|| ||||||||| |||| || || || || ||||||||| ||| || |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22205498 |
agataactgattcgataaggtactagtgaaccagttttggtttgtggtgtaatcagtgatatttatatctctatacataggacttgtttcaa |
22205407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 340 - 577
Target Start/End: Original strand, 20086527 - 20086764
Alignment:
| Q |
340 |
tcgtaataaatgactgcttgtttggataaagggcaatctaaggacagtttttgagttgcatgaactatgcattcaacacagatttgagaggagacgtcac |
439 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| ||| ||| |||| |
|
|
| T |
20086527 |
tcgtaataaattacagcttgtttggataatgggcaatctaaggaaagtttttgagttgcattaactatgcattcatcacagatttgaaaggtgacatcac |
20086626 |
T |
|
| Q |
440 |
ccctgcacatgaacaatccatagacagaatcagttcgatttacactagtgactgtggtgttgtagaattcattgttgcctatggcgtttgatgacaagat |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | | | | | ||||||||||||||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
20086627 |
ccctgcacatgaacaatccatagacagaattagagtggtctcctgtggtgactgtggtgttgtagaattcggtgttgccggtggcttttgatgacaatga |
20086726 |
T |
|
| Q |
540 |
agaaaggagggtcctggtattgatttggtaggtgctat |
577 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
20086727 |
agagaggagtgtcctggtattgatttggtaggtgctat |
20086764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 20085465 - 20085751
Alignment:
| Q |
13 |
ataattcttcccctaacattactcaattttgaccatggaattgctctattgattacatcctttagacaagtagcgcaatcctcactagacaaatctcgcg |
112 |
Q |
| |
|
||||||||||||| |||| ||| ||| |||||||||||||| ||| ||||||| ||||| |||||||||| || |||||||| ||||||||||||| ||| |
|
|
| T |
20085465 |
ataattcttcccccaacactacccaaatttgaccatggaatcgctgtattgatcacatcatttagacaagaagtgcaatcctgactagacaaatcttgcg |
20085564 |
T |
|
| Q |
113 |
tacattgtccaagactatacaagttttgttcatcatacagttttaatgaattagtcatatatctttcaacactgtaccccgtttcatatgcaagtttgga |
212 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||| |||||||||||||||||| ||||||||||| |||||| ||| || |||| ||||||| || |
|
|
| T |
20085565 |
tacattgtccaagagtatacaaggtttgtacatcatttagttttaatgaattagtcttatatctttcaccactgtcccctgtatcattcgcaagttgaga |
20085664 |
T |
|
| Q |
213 |
aaactgattcaataatgtcataatgtacaagttttggtctgt---------ataggtgatatttatatctctatacataggacttgt |
290 |
Q |
| |
|
|||||||| ||||||| || || |||||||||||| ||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
20085665 |
taactgatttgataatgtactagtgaacaagttttggtttgtgatggaatctttggtgatatttatatcgctatacataggacttgt |
20085751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 20237378 - 20237664
Alignment:
| Q |
13 |
ataattcttcccctaacattactcaattttgaccatggaattgctctattgattacatcctttagacaagtagcgcaatcctcactagacaaatctcgcg |
112 |
Q |
| |
|
||||||||||||| |||| | | ||| |||| ||||||||||||| || ||| ||| |||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
20237378 |
ataattcttcccccaacactgcccaaatttggccatggaattgctgtaacgatcacagtatttagacaagaagcgcaatcctcactagacaaatctctcg |
20237477 |
T |
|
| Q |
113 |
tacattgtccaagactatacaagttttgttcatcatacagttttaatgaattagtcatatatctttcaacactgtaccccgtttcatatgcaagtttgga |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| ||| ||||| |||||| ||| || |||| ||||||| | |
|
|
| T |
20237478 |
tacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcagatacatttcatcactgtcccctgtgtcattcgcaagttgata |
20237577 |
T |
|
| Q |
213 |
aaactgattcaataatgtcataatgtacaagttttggtctgt---------ataggtgatatttatatctctatacataggacttgt |
290 |
Q |
| |
|
|||||||| ||||||| || || || ||||||||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
20237578 |
taactgatttgataatgtactagtgaacgagttttggtatgtgatggaatcttcggtgatatttatatctctatacataggacttgt |
20237664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 22131362 - 22131648
Alignment:
| Q |
13 |
ataattcttcccctaacattactcaattttgaccatggaattgctctattgattacatcctttagacaagtagcgcaatcctcactagacaaatctcgcg |
112 |
Q |
| |
|
||||||||||||| |||| | | ||| |||| ||||||||||||| || ||| ||| |||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
22131362 |
ataattcttcccccaacactgcccaaatttggccatggaattgctgtaacgatcacagtatttagacaagaagcgcaatcctcactagacaaatctctcg |
22131461 |
T |
|
| Q |
113 |
tacattgtccaagactatacaagttttgttcatcatacagttttaatgaattagtcatatatctttcaacactgtaccccgtttcatatgcaagtttgga |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| ||| ||||| |||||| ||| || |||| ||||||| | |
|
|
| T |
22131462 |
tacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcagatacatttcatcactgtcccctgtgtcattcgcaagttgata |
22131561 |
T |
|
| Q |
213 |
aaactgattcaataatgtcataatgtacaagttttggtctgt---------ataggtgatatttatatctctatacataggacttgt |
290 |
Q |
| |
|
|||||||| ||||||| || || || ||||||||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
22131562 |
taactgatttgataatgtactagtgaacgagttttggtatgtgatggaatcttcggtgatatttatatctctatacataggacttgt |
22131648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 298 - 577
Target Start/End: Original strand, 20128192 - 20128477
Alignment:
| Q |
298 |
gtggaaaagaaatagttgtaggagtaacgaacattacactcgtcgtaataaatgactgcttgtttggataaagggcaatc------taaggacagttttt |
391 |
Q |
| |
|
|||||||||||| || ||| |||||| ||||| | ||||| ||||| ||||||| ||| ||||||||||| ||||||| | |||||||||||| |
|
|
| T |
20128192 |
gtggaaaagaaagaggtgttggagtatcgaaccatgcactcctcgtaccaaatgacagctcgtttggataaatggcaatccgagtctgaggacagttttt |
20128291 |
T |
|
| Q |
392 |
gagttgcatgaactatgcattcaacacagatttgagaggagacgtcacccctgcacatgaacaatccatagacagaatcagttcgatttacactagtgac |
491 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||||||| | |||| ||||||||| |
|
|
| T |
20128292 |
ctgttgcattaactatgcatttttgacagaactgagatagtacatcacctctgcacatgaacaatccatagacagaatcagaggggtttatactagtgac |
20128391 |
T |
|
| Q |
492 |
tgtggtgttgtagaattcattgttgcctatggcgtttgatgacaagatagaaaggagggtcctggtattgatttggtaggtgctat |
577 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||| |||||||| || ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
20128392 |
tgtggtgttgtagaattcggtgttgccgacggcttttgatgataaagaagagaggagtgtcctggtattgatttggtaggtgctat |
20128477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 298 - 577
Target Start/End: Complemental strand, 22204678 - 22204393
Alignment:
| Q |
298 |
gtggaaaagaaatagttgtaggagtaacgaacattacactcgtcgtaataaatgactgcttgtttggataaagggcaatc------taaggacagttttt |
391 |
Q |
| |
|
|||||||||||| || ||| |||||| ||||| | ||||| ||||| ||||||| ||| ||||||||||| ||||||| | |||||||||||| |
|
|
| T |
22204678 |
gtggaaaagaaagaggtgttggagtatcgaaccatgcactcctcgtaccaaatgacagctcgtttggataaatggcaatccgagtctgaggacagttttt |
22204579 |
T |
|
| Q |
392 |
gagttgcatgaactatgcattcaacacagatttgagaggagacgtcacccctgcacatgaacaatccatagacagaatcagttcgatttacactagtgac |
491 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||||||| | |||| ||||||||| |
|
|
| T |
22204578 |
ctgttgcattaactatgcatttttgacagaactgagatagtacatcacctctgcacatgaacaatccatagacagaatcagaggggtttatactagtgac |
22204479 |
T |
|
| Q |
492 |
tgtggtgttgtagaattcattgttgcctatggcgtttgatgacaagatagaaaggagggtcctggtattgatttggtaggtgctat |
577 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||| |||||||| || ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
22204478 |
tgtggtgttgtagaattcggtgttgccgacggcttttgatgataaagaagagaggagtgtcctggtattgatttggtaggtgctat |
22204393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 24385917 - 24385744
Alignment:
| Q |
13 |
ataattcttcccctaacattactcaattttgaccatggaattgctctattgattacatcctttagacaagtagcgcaatcctcactagacaaatctcgcg |
112 |
Q |
| |
|
||||||||||||| |||| ||| ||| ||| |||||||||||||| || ||| ||||| |||||||||| ||||||||||| ||||||||||||| ||| |
|
|
| T |
24385917 |
ataattcttcccccaacactacccaaattttaccatggaattgctgtaacgatcacatcatttagacaagaagcgcaatcctgactagacaaatcttgcg |
24385818 |
T |
|
| Q |
113 |
tacattgtccaagactatacaagtt------ttgttcatcatacagttttaatgaattagtcatatatctttca |
180 |
Q |
| |
|
|||||||||||||| |||||||| | |||| |||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
24385817 |
tacattgtccaagagtatacaaggtttgtacttgtacatcatttagttttaatgaattagtcttatatctttca |
24385744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 380 - 509
Target Start/End: Complemental strand, 24384803 - 24384673
Alignment:
| Q |
380 |
aggacagtttttgagttgcatgaactatgcattcaacacagatttgagaggagacgtcacccctgcacatgaacaatccatagacagaatcag-ttcgat |
478 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||| | ||||||| | | ||||||||||||||||||||||||||||||| |||||| | | | |
|
|
| T |
24384803 |
aggacagtttttgagttgcattaactatgcattcatgacaaagttgagagtaaatgtcacccctgcacatgaacaatccatagacaaaatcagatagggt |
24384704 |
T |
|
| Q |
479 |
ttacactagtgactgtggtgttgtagaattc |
509 |
Q |
| |
|
||| |||| |||||| ||||||||||||||| |
|
|
| T |
24384703 |
ttatactaatgactgaggtgttgtagaattc |
24384673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 298 - 536
Target Start/End: Original strand, 21972366 - 21972604
Alignment:
| Q |
298 |
gtggaaaagaaatagttgtaggagtaacgaacattacactcgtcgtaataaatgactgcttgtttggataaagggcaatctaaggacagtttttgagttg |
397 |
Q |
| |
|
|||||||||||| |||||| ||| | ||||| | |||||| |||| |||| || ||||||||||| |||| ||| ||| |||| || | | |||| |
|
|
| T |
21972366 |
gtggaaaagaaagagttgtcagagaatcgaaccatgcactcgccgtaccaaatcacagcttgtttggacaaagagcactctgaggatagctgattggttg |
21972465 |
T |
|
| Q |
398 |
catgaactatgcattcaacacagatttgagaggagacgtcacccctgcacatgaacaatccatagacagaatcagttcgatttacactagtgactgtggt |
497 |
Q |
| |
|
| | ||||||||| ||| ||| | ||||||| | |||||| || |||||||||||||||||||| || | | ||||| ||||||||||||||| |
|
|
| T |
21972466 |
ccttaactatgcagtcatgacatagatgagagggtatgtcacctctacacatgaacaatccatagacggatacggacgaatttatactagtgactgtggt |
21972565 |
T |
|
| Q |
498 |
gttgtagaattcattgttgcctatggcgtttgatgacaa |
536 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
21972566 |
gttgtagaatttggtgttgcctatggcttttgatgacaa |
21972604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 21971375 - 21971481
Alignment:
| Q |
42 |
tgaccatggaattgctctattgattacatcctttagacaagtagcgcaatcctcactagacaaatctcgcgtacattgtccaagactatacaagttttgt |
141 |
Q |
| |
|
||||||||||||| ||||| |||| | ||| |||||||| | | |||||||| ||||||||||||| ||||||||| ||||| ||||||| ||||| |
|
|
| T |
21971375 |
tgaccatggaatttctctactgatcatatcatttagacatgaattgcaatcctgactagacaaatcttttgtacattgttcaagagtatacaaagtttgt |
21971474 |
T |
|
| Q |
142 |
tcatcat |
148 |
Q |
| |
|
| ||||| |
|
|
| T |
21971475 |
ttatcat |
21971481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 18981153 - 18981222
Alignment:
| Q |
13 |
ataattcttcccctaacattactcaattttgaccatggaattgctctattgattacatcctttagacaag |
82 |
Q |
| |
|
||||||||||||| |||| ||| ||| |||||||||||||||||| || | || ||||| |||||||||| |
|
|
| T |
18981153 |
ataattcttcccccaacactacccaaatttgaccatggaattgctgtagtaatcacatcatttagacaag |
18981222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 536
Target Start/End: Original strand, 20205942 - 20206043
Alignment:
| Q |
435 |
gtcacccctgcacatgaacaatccatagacagaatcagttcgatttacactagtgactgtggtgttgtagaattcattgttgcctatggcgtttgatgac |
534 |
Q |
| |
|
|||||| || ||||||||| |||||||||| || |||| |||||| |||||||||||| ||||||||||| |||| ||| |||| ||||||||| |
|
|
| T |
20205942 |
gtcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctttggcttttgatgac |
20206041 |
T |
|
| Q |
535 |
aa |
536 |
Q |
| |
|
|| |
|
|
| T |
20206042 |
aa |
20206043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 536
Target Start/End: Original strand, 22099965 - 22100066
Alignment:
| Q |
435 |
gtcacccctgcacatgaacaatccatagacagaatcagttcgatttacactagtgactgtggtgttgtagaattcattgttgcctatggcgtttgatgac |
534 |
Q |
| |
|
|||||| || ||||||||| |||||||||| || |||| |||||| |||||||||||| ||||||||||| |||| ||| |||| ||||||||| |
|
|
| T |
22099965 |
gtcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctttggcttttgatgac |
22100064 |
T |
|
| Q |
535 |
aa |
536 |
Q |
| |
|
|| |
|
|
| T |
22100065 |
aa |
22100066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 24385656 - 24385624
Alignment:
| Q |
258 |
ggtgatatttatatctctatacataggacttgt |
290 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
24385656 |
ggtgatatttatatcgctatacataggacttgt |
24385624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 340 - 577
Target Start/End: Original strand, 16476 - 16713
Alignment:
| Q |
340 |
tcgtaataaatgactgcttgtttggataaagggcaatctaaggacagtttttgagttgcatgaactatgcattcaacacagatttgagaggagacgtcac |
439 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| ||| ||| |||| |
|
|
| T |
16476 |
tcgtaataaattacagcttgtttggataatgggcaatctaaggaaagtttttgagttgcattaactatgcattcatcacagatttgaaaggtgacatcac |
16575 |
T |
|
| Q |
440 |
ccctgcacatgaacaatccatagacagaatcagttcgatttacactagtgactgtggtgttgtagaattcattgttgcctatggcgtttgatgacaagat |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| | | ||||||||||||||||||||||| ||||||| | ||| |||||||| ||| |
|
|
| T |
16576 |
ccctgcacatgaacaatccatagacagaatcagaggggtttcctgtggtgactgtggtgttgtagaattcggtgttgccgacggcttttgatgataagga |
16675 |
T |
|
| Q |
540 |
agaaaggagggtcctggtattgatttggtaggtgctat |
577 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
16676 |
agagaggagtgtcctggtattgatttggtaggtgctat |
16713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 15415 - 15706
Alignment:
| Q |
10 |
tagataattcttcccctaacattactcaattttgaccatggaattgctctattgattacatcctttagacaagtagcgcaatcctcactagacaaatctc |
109 |
Q |
| |
|
|||||||||||||||| |||| ||| ||| |||||||||||||||| | || |||| |||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15415 |
tagataattcttcccccaacactacccaaatttgaccatggaattgatgtagtgatcacattatttagacaagtagcgcaaccctcactagacaaatctc |
15514 |
T |
|
| Q |
110 |
gcgtacattgtccaagactatacaagttttgttcatcatacagttttaatgaattagtcatatatctttcaacactgtaccccgtttcatatgcaagttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| ||||||||||| |||||| ||| || |||| ||||||| |
|
|
| T |
15515 |
gcgtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcttatatctttcatcactgtcccctgtatcattcgcaagttg |
15614 |
T |
|
| Q |
210 |
ggaaaactgattcaataatgtcataatgtacaagttttggtctgt------ataggtgatatttatatctctatacataggacttgtatcaa |
295 |
Q |
| |
|
|| ||||||||| |||| || || || || ||||||||| ||| || |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15615 |
agataactgattcgataaggtactagtgaaccagttttggtttgtggtgtaatcagtgatatttatatctctatacataggacttgtttcaa |
15706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 48527 - 48238
Alignment:
| Q |
10 |
tagataattcttcccctaacattactcaattttgaccatggaattgctctattgattacatcctttagacaagtagcgcaatcctcactagacaaatctc |
109 |
Q |
| |
|
|||||||||||||||| |||| ||| ||| |||||||||||||||||| || ||| ||||| ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
48527 |
tagataattcttcccccaacactacccaaatttgaccatggaattgctgtaacgatcacatcatttagacaagtagagcaatcctgactagacaaatctc |
48428 |
T |
|
| Q |
110 |
gcgtacattgtccaagactatacaagttttgttcatcatacagttttaatgaattagtcatatatctttcaacactgtaccccgtttcatatgcaagttt |
209 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| ||||| ||||||||||||||||||| ||||||| ||| |||||| ||| || |||| |||||||| |
|
|
| T |
48427 |
tcgtacattgtgcaagactatacaaggtttgtttatcattcagttttaatgaattagtcttatatctatcatcactgtcccctgtatcatttgcaagttg |
48328 |
T |
|
| Q |
210 |
ggaaaactgattcaataatgtcataatgtacaagttttggtctgt------ata---ggtgatatttatatctctatacataggacttgt |
290 |
Q |
| |
|
|| ||||||||| ||||||| || || |||||||| | | ||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48327 |
agataactgattcgataatgtactagtgaacaagtttagatatgtgctaaaatatttggtgatatttatatctctatacataggacttgt |
48238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 355 - 577
Target Start/End: Complemental strand, 47450 - 47228
Alignment:
| Q |
355 |
gcttgtttggataaagggcaatctaaggacagtttttgagttgcatgaactatgcattcaacacagatttgagaggagacgtcacccctgcacatgaaca |
454 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| |||||||| |||||| ||||||||||||| |||| |||||| ||||||| ||||||||||||||||||| |
|
|
| T |
47450 |
gcttctttggataatgggcaatctaaggacggtttttgaattgcattaactatgcattcatcacatatttgaaaggagacatcacccctgcacatgaaca |
47351 |
T |
|
| Q |
455 |
atccatagacagaatcagttcgatttacactagtgactgtggtgttgtagaattcattgttgcctatggcgtttgatgacaagatagaaaggagggtcct |
554 |
Q |
| |
|
|||||||||||||||||| | ||| | | ||||||||||||||||||||||| ||||||| |||| ||||||||||| ||| ||||| ||| | |
|
|
| T |
47350 |
atccatagacagaatcagagtggtttcctgtggtgactgtggtgttgtagaattcggtgttgccggtggcttttgatgacaatgaagagaggagtgtctt |
47251 |
T |
|
| Q |
555 |
ggtattgatttggtaggtgctat |
577 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
47250 |
ggtattgatttggtaggtgctat |
47228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 115; Significance: 4e-58; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 6051 - 5765
Alignment:
| Q |
13 |
ataattcttcccctaacattactcaattttgaccatggaattgctctattgattacatcctttagacaagtagcgcaatcctcactagacaaatctcgcg |
112 |
Q |
| |
|
|||||||| |||| |||| ||| ||| |||||||| ||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6051 |
ataattctgcccccaacactacccaaatttgaccagggaattgctgtagcgatcacatcatttagacaagtagcgcaatcctcactagacaaatctcgcg |
5952 |
T |
|
| Q |
113 |
tacattgtccaagactatacaagttttgttcatcatacagttttaatgaattagtcatatatctttcaacactgtaccccgtttcatatgcaagtttgga |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||||| ||| |||||| ||| || |||| ||||||| || |
|
|
| T |
5951 |
tacattgtccaagactatacaaggtttgtacatcattcagttttaatgaattagtcttatatctatcatcactgtcccctgtatcattcgcaagttgaga |
5852 |
T |
|
| Q |
213 |
aaactgattcaataatgtcataatgtacaagttttggtctg---------tataggtgatatttatatctctatacataggacttgt |
290 |
Q |
| |
|
|||| ||| ||||||| || || |||||||||||| || | | ||||||||||||||||||||||||||||||||| |
|
|
| T |
5851 |
taactcattggataatgtactagtgaacaagttttggtttgtgctacaatttttggtgatatttatatctctatacataggacttgt |
5765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 282 - 577
Target Start/End: Complemental strand, 5026 - 4740
Alignment:
| Q |
282 |
aggacttgtatcaacggtggaaaagaaatagttgtaggagtaacgaacattacactcgtcgtaataaatgactgcttgtttggataaagggcaatctaag |
381 |
Q |
| |
|
|||| |||||||||| |||||||||||| | | | |||||| ||||| | || | ||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
5026 |
aggatttgtatcaacagtggaaaagaaagactcattggagtatcgaaccatgcaattttcgtaataaattacagcttgtttggataatgggcaatctaag |
4927 |
T |
|
| Q |
382 |
gacagtttttgagttgcatgaactatgcattcaacacagatttgagaggagacgtcacccctgcacatgaacaatccatagacagaatcagttcgattta |
481 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
4926 |
gacagtttttgagttgcattaactatgcattcatcacagatttgaaaggtgacatcacccctgcacatgaacaatccatagacagaatcagaggggttt- |
4828 |
T |
|
| Q |
482 |
cactagtgactgtggtgttgtagaattcattgttgcctatggcgtttgatgacaagatagaaaggagggtcctggtattgatttggtaggtgctat |
577 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||| |||||||||||| ||||||||||||| || ||| ||||| ||||||||| |
|
|
| T |
4827 |
--------cctgtgatgttgtagaattcggtgttgcctgtggcttttgatgacaaggaagaaaggagggtcatgagattagtttggaaggtgctat |
4740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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