View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17421_low_15 (Length: 331)
Name: NF17421_low_15
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 11479982 - 11480281
Alignment:
| Q |
11 |
attatactaagtaaaagaataataaatttatatttactaaccatcattgtattttcatcaacaacaaatataaacgtgnnnnnnnaaaagacatatttcg |
110 |
Q |
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| T |
11479982 |
attatgctaagtaaaagaataataaatttatctttattaaccatcattgtttcttcatcaacaacaaatataaacgtgtttttttaaaagacatatttcg |
11480081 |
T |
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| Q |
111 |
acatgattaaccataattttttagatgttcaaatgatctccatcaaaactcgtaaattatggttaaccacatcaactatcgttgttgatgaagttatgtt |
210 |
Q |
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| T |
11480082 |
acgtgattaaccataattttttagatgttcaaatgatctccatcaaaactcgtaaattatggttaaccacatcaactatcgttgttgatgaagttatgtt |
11480181 |
T |
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| Q |
211 |
gatgcagtggcggagctcttaaggagccaaacggagcagtggctccccccaccaannnnnnnnacataaaataacttaggaagatacaaaaatacatctc |
310 |
Q |
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| T |
11480182 |
gatgcagcggcggagctcttaagaagcccaagggagca-------cccccaccaattttttttacataaaataacttaggaagatacaaaaatacatctc |
11480274 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 31305986 - 31306031
Alignment:
| Q |
216 |
agtggcggagctcttaaggagccaaacggagcagtggctcccccca |
261 |
Q |
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| T |
31305986 |
agtggcagagctcttaaggagcctaagggagcagtggctcccccca |
31306031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 34211631 - 34211580
Alignment:
| Q |
214 |
gcagtggcggagctcttaaggagccaaacggagcagtggctccccccaccaa |
265 |
Q |
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| T |
34211631 |
gcagtggcggaacttttaaggagtctaagggagcagtggctccccccaccaa |
34211580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 6047855 - 6047897
Alignment:
| Q |
216 |
agtggcggagctcttaaggagccaaacggagcagtggctcccc |
258 |
Q |
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| T |
6047855 |
agtggcggagctcttaaagagccaaaaggagcattggctcccc |
6047897 |
T |
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