View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17421_low_22 (Length: 278)

Name: NF17421_low_22
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17421_low_22
NF17421_low_22
[»] chr1 (4 HSPs)
chr1 (13-262)||(28496400-28496649)
chr1 (150-253)||(50789119-50789222)
chr1 (189-263)||(36989102-36989176)
chr1 (196-259)||(4160143-4160206)
[»] chr7 (1 HSPs)
chr7 (149-259)||(40749112-40749222)
[»] chr8 (2 HSPs)
chr8 (198-262)||(5789014-5789078)
chr8 (201-262)||(33186509-33186570)
[»] chr4 (1 HSPs)
chr4 (180-263)||(30518438-30518521)
[»] chr2 (1 HSPs)
chr2 (189-262)||(42898060-42898133)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 28496649 - 28496400
Alignment:
Q  13 aaaatcacaatgtgaccgtgatttaattttattaaactcattgctcatccgaacatacaaaaatatatttttctatgattttcaatttgtaactttttca 112  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496649 aaaatcacagtgtcaccgtgatttaattttactaaactcattgctcatccgaacatacaaaaatatatttttctatgattttcaatttgtaactttttca 28496550  T
Q  113 tatatttcaaattggtaatggaaattaatttgactatacagatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496549 tatatttcaaattggtaatggaaattaatttgactatacagatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattc 28496450  T
Q  213 atctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaact 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496449 atctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaact 28496400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 50789222 - 50789119
Alignment:
Q  150 acagatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatc 249  Q
    |||||||||||||| ||||| || || || || || ||||| || |||||||||||||| || || |||||  ||||||||||||||||||||||||| |    
T  50789222 acagatccagatgcagaggtgatagcactatctcccaagaccctaatggcaacaaacaggtttatttgtgaggtatgcaacaaagggttccaaagagagc 50789123  T
Q  250 aaaa 253  Q
    ||||    
T  50789122 aaaa 50789119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 36989102 - 36989176
Alignment:
Q  189 acactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaactg 263  Q
    ||||| ||||| |||||||||||| | ||||||||||| ||||| || || |||||||| ||||| |||||||||    
T  36989102 acactaatggctacaaacagattcgtatgtgaaatatgtaacaagggttttcaaagagaccaaaatcttcaactg 36989176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 4160143 - 4160206
Alignment:
Q  196 tggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttca 259  Q
    ||||||||||||| ||||| ||||| || || |||||||| || |||||||||||||| |||||    
T  4160143 tggcaacaaacaggttcatttgtgagatttgtaacaaaggttttcaaagagatcaaaatcttca 4160206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 259
Target Start/End: Original strand, 40749112 - 40749222
Alignment:
Q  149 tacagatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagat 248  Q
    ||||||||||||||| || ||||||||||| || || ||||| || ||||| || ||| ||||| |||| ||||||||||||||||| ||||||||||||    
T  40749112 tacagatccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagat 40749211  T
Q  249 caaaaccttca 259  Q
    || || |||||    
T  40749212 cagaatcttca 40749222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 5789078 - 5789014
Alignment:
Q  198 gcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaact 262  Q
    |||| |||||| ||||| ||||| || |||||||||||||| |||||||||||||| ||||||||    
T  5789078 gcaaaaaacaggttcatatgtgagatctgcaacaaagggtttcaaagagatcaaaatcttcaact 5789014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 33186509 - 33186570
Alignment:
Q  201 acaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaact 262  Q
    |||||||||||  | ||||||||||| ||||||||||| ||||||||||| || ||||||||    
T  33186509 acaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaact 33186570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 30518521 - 30518438
Alignment:
Q  180 tcaccgaagacactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaactg 263  Q
    ||||| |||||||||||||| |||||||||||| | ||||||| |||    ||||| || |||||||||||||| |||||||||    
T  30518521 tcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactg 30518438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 42898060 - 42898133
Alignment:
Q  189 acactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaact 262  Q
    ||||| ||||||||||| |||||||| ||||| || || |||||||| || ||||||||||| || ||||||||    
T  42898060 acactgatggcaacaaatagattcatttgtgagatctgtaacaaaggatttcaaagagatcagaatcttcaact 42898133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University