View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17421_low_23 (Length: 276)

Name: NF17421_low_23
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17421_low_23
NF17421_low_23
[»] chr4 (14 HSPs)
chr4 (1-266)||(25930368-25930623)
chr4 (1-79)||(25929822-25929900)
chr4 (4-79)||(25929747-25929822)
chr4 (1-75)||(25929674-25929748)
chr4 (1-79)||(25930134-25930212)
chr4 (17-79)||(25930189-25930251)
chr4 (29-79)||(25929624-25929674)
chr4 (1-79)||(25929900-25929978)
chr4 (100-163)||(25647406-25647469)
chr4 (4-79)||(25930215-25930290)
chr4 (17-79)||(25929651-25929713)
chr4 (13-79)||(25929990-25930056)
chr4 (13-79)||(25930029-25930095)
chr4 (17-70)||(25930267-25930320)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 25930368 - 25930623
Alignment:
Q  1 tttggcttcatggctagctttgtagatgtaattgggttgtttggcatcattgttggccttataaatgtaattgggttgtctgtccccattcgaatcatct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25930368 tttggcttcatggctaggtttgtagatgtaattgggttgtttggcatcgttgttggccttataaatgtaattgggttgtctgtccccattcgaatcatct 25930467  T
Q  101 tgtttctgatcttgcagctctatcttcatgtctatggcaccgatgccttggccattctacaaatgaagtcaatgagaatattagtggcccaagtaactag 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25930468 tgtttttgatcttgcagctctatcttcatgtctatggcaccgatgccttggccattctacaaatgaagtcaatgagaatattagtggcccaagtaactag 25930567  T
Q  201 tctaaataatatgaactgatatgaactgatgcttgatgtttgatcgaaagaacatttaatgatgat 266  Q
    ||||||||          ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25930568 tctaaata----------atatgaactgatgcttgatgtttgatcgaaagaacatttaacgatgat 25930623  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 25929822 - 25929900
Alignment:
Q  1 tttggcttcatggctagctttgtagatgtaattgggttgtttggcatcattgttggccttataaatgtaattgggttgt 79  Q
    |||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||    
T  25929822 tttgacttcatcgctagctttgtaaatgtagttgggttgtttggcttcattgttggctttataaatgtaattgggttgt 25929900  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 25929747 - 25929822
Alignment:
Q  4 ggcttcatggctagctttgtagatgtaattgggttgtttggcatcattgttggccttataaatgtaattgggttgt 79  Q
    |||||||||| | |||||||| ||||| |||||||||||||| || || ||||| |||||||||||||||||||||    
T  25929747 ggcttcatggttggctttgtaaatgtagttgggttgtttggcttctttattggctttataaatgtaattgggttgt 25929822  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 25929674 - 25929748
Alignment:
Q  1 tttggcttcatggctagctttgtagatgtaattgggttgtttggcatcattgttggccttataaatgtaattggg 75  Q
    |||| |||||| | |||||||||| |||||||||||||||||||| |||| |||||| || ||||||||||||||    
T  25929674 tttgacttcatcgttagctttgtaaatgtaattgggttgtttggcttcatggttggctttgtaaatgtaattggg 25929748  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 25930134 - 25930212
Alignment:
Q  1 tttggcttcatggctagctttgtagatgtaattgggttgtttggcatcattgttggccttataaatgtaattgggttgt 79  Q
    |||| ||||||||||||||||||| |||||  | ||||||||||| ||| ||||||| ||||||||||| |||||||||    
T  25930134 tttgacttcatggctagctttgtaaatgtaggttggttgtttggcttcactgttggctttataaatgtagttgggttgt 25930212  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 25930189 - 25930251
Alignment:
Q  17 gctttgtagatgtaattgggttgtttggcatcattgttggccttataaatgtaattgggttgt 79  Q
    ||||| || ||||| |||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  25930189 gctttataaatgtagttgggttgttcggcttcattgttggctttataaatgtaattgggttgt 25930251  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 25929624 - 25929674
Alignment:
Q  29 taattgggttgtttggcatcattgttggccttataaatgtaattgggttgt 79  Q
    ||||||||||||||||| || || ||||| |||||||||||||||||||||    
T  25929624 taattgggttgtttggcttctttattggctttataaatgtaattgggttgt 25929674  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 25929900 - 25929978
Alignment:
Q  1 tttggcttcatggctagctttgtagatgtaattgggttgtttggcatcattgttggccttataaatgtaattgggttgt 79  Q
    ||||||||||||||||||||||||  |||| |||||||||||||| |  | |||| | || |||||||| |||||||||    
T  25929900 tttggcttcatggctagctttgtaattgtagttgggttgtttggctttctggttgactttgtaaatgtagttgggttgt 25929978  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 25647469 - 25647406
Alignment:
Q  100 ttgtttctgatcttgcagctctatcttcatgtctatggcaccgatgccttggccattctacaaa 163  Q
    |||||| ||||||||||||||| |||||| || | | |||| ||||||||| ||||||||||||    
T  25647469 ttgtttttgatcttgcagctctgtcttcaagtttctagcactgatgccttgtccattctacaaa 25647406  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 25930215 - 25930290
Alignment:
Q  4 ggcttcatggctagctttgtagatgtaattgggttgtttggcatcattgttggccttataaatgtaattgggttgt 79  Q
    |||||||| | | ||||| || |||||||||||||||||| | ||||||||||| || |||||||| |||| ||||    
T  25930215 ggcttcattgttggctttataaatgtaattgggttgtttgacttcattgttggctttgtaaatgtagttggattgt 25930290  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 25929651 - 25929713
Alignment:
Q  17 gctttgtagatgtaattgggttgtttggcatcattgttggccttataaatgtaattgggttgt 79  Q
    ||||| || |||||||||||||||||| | |||| ||| || || ||||||||||||||||||    
T  25929651 gctttataaatgtaattgggttgtttgacttcatcgttagctttgtaaatgtaattgggttgt 25929713  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 25929990 - 25930056
Alignment:
Q  13 gctagctttgtagatgtaattgggttgtttggcatcattgttggccttataaatgtaattgggttgt 79  Q
    |||||||||||| ||||| |||||||||||||  || | | | || |||||||||||||||||||||    
T  25929990 gctagctttgtaaatgtagttgggttgtttggattcgtcgctagctttataaatgtaattgggttgt 25930056  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 25930029 - 25930095
Alignment:
Q  13 gctagctttgtagatgtaattgggttgtttggcatcattgttggccttataaatgtaattgggttgt 79  Q
    ||||||||| || |||||||||||||||||| | |||| | | ||||||||||| ||||| ||||||    
T  25930029 gctagctttataaatgtaattgggttgtttgacttcatcgctagccttataaatataatttggttgt 25930095  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 25930267 - 25930320
Alignment:
Q  17 gctttgtagatgtaattgggttgtttggcatcattgttggccttataaatgtaa 70  Q
    |||||||| ||||| |||| ||||||||| || |||||| ||||||||||||||    
T  25930267 gctttgtaaatgtagttggattgtttggcttcgttgttgaccttataaatgtaa 25930320  T

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