View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17421_low_25 (Length: 264)
Name: NF17421_low_25
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 26569697 - 26569464
Alignment:
| Q |
15 |
catctcttcctcctcctcctaaagaccaaaacggaatatggcatcaccatctcaaaactttgcatccaagttaacagcacttgttgtggatgatgatgca |
114 |
Q |
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| T |
26569697 |
catctcttcctcctcctcctaaagaccaaaaccgaatatggcatcaccatctcaaaactttgcatccaagttaacagcacttgttgtggatgatgatgca |
26569598 |
T |
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| Q |
115 |
atgacccgaagaattcatcaaatgacgttgagtaacttaggagttaacaacacttgtgtgaaaaacggaaaagaagcagtggaaattcatcagtatggta |
214 |
Q |
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| T |
26569597 |
atgacccgaagaattcatcaaatgacgttgagtaacttaggagttaacaacacttgtgtgaaaaacggaaaagaagcagtggaaattcatcagtatggta |
26569498 |
T |
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| Q |
215 |
aaaaatttgacctaatcctgatggataaggatat |
248 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
26569497 |
aaaaatttgacctaatcctgatggataaggatat |
26569464 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 248
Target Start/End: Original strand, 39924795 - 39924978
Alignment:
| Q |
65 |
ctcaaaactttgcatccaagttaacagcacttgttgtggatgatgatgcaatgacccgaagaattcatcaaatgacgttgagtaacttaggagttaacaa |
164 |
Q |
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| T |
39924795 |
ctcaaaactttgtatccaagctaacagcactggttgtggatgacaatataattaaccgaaagattcatcaaaagatgttgaataaatttggagtcaaaag |
39924894 |
T |
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| Q |
165 |
cacttgtgtgaaaaacggaaaagaagcagtggaaattcatcagtatggtaaaaaatttgacctaatcctgatggataaggatat |
248 |
Q |
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| T |
39924895 |
tcaaggtgtggagaatggaaaagaagcagtggacattcattggcgtggacaaaaatttgacctaattctcatggacatggatat |
39924978 |
T |
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