View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17421_low_29 (Length: 250)
Name: NF17421_low_29
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 54291921 - 54291992
Alignment:
| Q |
174 |
tttagaatgtcaaggcatagttctaacgccctgcaatctttccactttagtttgggaagtacttcatctcac |
245 |
Q |
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| T |
54291921 |
tttagaatgtcaaggcatagttctaacgccctgcaatctatccactttagtttgggaagcacttcatttcac |
54291992 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 16944935 - 16944985
Alignment:
| Q |
17 |
tgtagctatctggcaagacaaattccagcaccaattcaagccaaaatcaga |
67 |
Q |
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| T |
16944935 |
tgtagccatctgccaacacaaattcctgcaccaattcaaaccaaaatcaga |
16944985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 15431930 - 15431978
Alignment:
| Q |
19 |
tagctatctggcaagacaaattccagcaccaattcaagccaaaatcaga |
67 |
Q |
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| T |
15431930 |
tagccatctgccaacacaaattcctgcaccaattcaaaccaaaatcaga |
15431978 |
T |
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