View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17421_low_30 (Length: 240)
Name: NF17421_low_30
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4144203 - 4144426
Alignment:
| Q |
1 |
tttatgcaagaatatatgttattataaagtagcaataattgttaccctctcttctaacattcattcacacaccctcctcttacttcaattcaagtttgaa |
100 |
Q |
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| T |
4144203 |
tttatgcaagaatatatgttattataaagtaacaataattgttaccctctcttctaacattcattcacacaccctcctcttacttcaattcaagtttgaa |
4144302 |
T |
|
| Q |
101 |
atagaaataaggcaactttacctctatgcctggttgaacattttctccacaaaagataagcacatatagccaaagtacatgctcctatccccccaacaat |
200 |
Q |
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| T |
4144303 |
atagaaataaggcaactttacctctatgcctggttgaacattttctccacaaaagataagcacatatagccaaagtacatgctcctatccccccagcaat |
4144402 |
T |
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| Q |
201 |
ggcaatgattaaaacactcttgtt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
4144403 |
ggcaatgattaaaacactcttgtt |
4144426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 4152132 - 4152275
Alignment:
| Q |
82 |
acttcaattcaagtttgaaatagaaataaggcaactttacctctatgcctggttgaacattttctccacaaaagataagcacatatagccaaagtacatg |
181 |
Q |
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| T |
4152132 |
acttcaatgcaagtttgaaatagaaatcaggaaactttacctttatgcctagcagaacatttcctccataaaagataagcacatataaccaagataagtg |
4152231 |
T |
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| Q |
182 |
ctcctatccccccaacaatggcaatgattaaaacactcttgttg |
225 |
Q |
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| T |
4152232 |
ctcctatcaccccagcaattacaatgattaaaaaactcttgttg |
4152275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 224
Target Start/End: Original strand, 4161669 - 4161809
Alignment:
| Q |
84 |
ttcaattcaagtttgaaatagaaataaggcaactttacctctatgcctggttgaacattttctccacaaaagataagcacatatagccaaagtacatgct |
183 |
Q |
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||||||||||||||| ||| |||||||||||||||||| ||||||| | || ||||| |||||||||||||||||||||||| |||| || ||||| |
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| T |
4161669 |
ttcaattcaagtttgcaatgacaataaggcaactttacctgtatgcctagcagaccatttcctccacaaaagataagcacatataaccaagataaatgct |
4161768 |
T |
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| Q |
184 |
cctatccccccaacaatggcaatgattaaaacactcttgtt |
224 |
Q |
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| T |
4161769 |
cctaaacccccggcaattgcaatgattaaaaaactcttgtt |
4161809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 214
Target Start/End: Original strand, 4133288 - 4133418
Alignment:
| Q |
84 |
ttcaattcaagtttgaaatagaaataaggcaactttacctctatgcctggttgaacattttctccacaaaagataagcacatatagccaaagtacatgct |
183 |
Q |
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||||||||||||||||| ||||||| ||| |||||||||| ||||||| | |||| | || |||||||||||||||||||| | |||||||| ||||| |
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| T |
4133288 |
ttcaattcaagtttgaactagaaatcaggaaactttacctttatgcctagcagaacgtcttagccacaaaagataagcacatacaaccaaagtaaatgct |
4133387 |
T |
|
| Q |
184 |
cctatccccccaacaatggcaatgattaaaa |
214 |
Q |
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|| | |||||| |||| | ||||||||||| |
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| T |
4133388 |
cccgtgcccccagcaattgaaatgattaaaa |
4133418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 4122799 - 4122905
Alignment:
| Q |
119 |
tacctctatgcctggttgaacattttctccacaaaagataagcacatatagccaaagtacatgctcctatccccccaacaatggcaatgattaaaacact |
218 |
Q |
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||||| ||||||| | |||||||| ||||| |||||||||||||||||| |||| || |||||||||| ||||| |||| |||||||||||| ||| |
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| T |
4122799 |
tacctttatgcctagcagaacatttcctccataaaagataagcacatataaccaagataagtgctcctatcaccccagcaattacaatgattaaaaaact |
4122898 |
T |
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| Q |
219 |
cttgttg |
225 |
Q |
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||||||| |
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| T |
4122899 |
cttgttg |
4122905 |
T |
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