View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17421_low_31 (Length: 238)
Name: NF17421_low_31
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 40285388 - 40285607
Alignment:
| Q |
9 |
agaagaatgtctgtggatcaatagggagacacatgcggggtgttgatggcgtgtattcagatggtaaaggcttagggagtggtggtgatgaagatgcgtc |
108 |
Q |
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| T |
40285388 |
agaagaatgtctgtggatcaatagggagacgcgtgcggggtgttgatggtgtgtattcagatggtaaatgcttagggagtggtggtgatgaagatgcgtc |
40285487 |
T |
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| Q |
109 |
gacaatgtcatgatgaggagcatta---tcatcacatgaaagtgcagcatgatcaccatggttcataatctttgagttatcactgatgagttgtttcttc |
205 |
Q |
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| T |
40285488 |
gataatgtcatgaggaggagcatcatcttcatcacatgaaagtgcagcatgatcagcatggttcatcatctttgagttatcactgatgagttgtttcttc |
40285587 |
T |
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| Q |
206 |
tttctttccatggaatttgt |
225 |
Q |
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| T |
40285588 |
tttctttccatggaatttgt |
40285607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 40457690 - 40457563
Alignment:
| Q |
101 |
gatgcgtcgacaatgtcatgatgaggagcattatc---atcacatgaaagtgcagcatgatcaccatggttcataatctttgagttatcactgatgagtt |
197 |
Q |
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| T |
40457690 |
gatgcgtcgataatgtcatgaggaggagcatcatcttcatcacatgaaagtgcagcatgatcagcatggttcatcatctttgagttatcactgatgagtt |
40457591 |
T |
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| Q |
198 |
gtttcttctttctttccatggaatttgt |
225 |
Q |
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| T |
40457590 |
gtttcttctttctttccatggaatttgt |
40457563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 40457869 - 40457810
Alignment:
| Q |
45 |
ggggtgttgatggcgtgtattcagatggtaaaggcttagggagtggtggtgatgaagatg |
104 |
Q |
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| T |
40457869 |
ggggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtggtgatgaagatg |
40457810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 40280481 - 40280540
Alignment:
| Q |
45 |
ggggtgttgatggcgtgtattcagatggtaaaggcttagggagtggtggtgatgaagatg |
104 |
Q |
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| T |
40280481 |
ggggtgatgatggtgtccattcagatgggaaaggcttaggaagtggtggtgatgaagatg |
40280540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 40280654 - 40280712
Alignment:
| Q |
46 |
gggtgttgatggcgtgtattcagatggtaaaggcttagggagtggtggtgatgaagatg |
104 |
Q |
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| T |
40280654 |
gggtgatgatggtgtccattcagatgggaaaggcttaggaagtggtggtgatgaagatg |
40280712 |
T |
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