View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17421_low_35 (Length: 227)
Name: NF17421_low_35
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_low_35 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4143987 - 4144213
Alignment:
| Q |
1 |
agtgaaagttgtttgtggcagcttcaagctttgcgaactcatacactggtagctcatctattttcatttggttttgttctctattaatcaagttttgaga |
100 |
Q |
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| T |
4143987 |
agtgaaagttgtttgtggcagcttcaagctttgcgaactcatacactggtagctcatctattttcatttggttttgttctctattaatcaagttttgaga |
4144086 |
T |
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| Q |
101 |
cttacttcctgaatacatttgtcaattgttaacaagaatatatattgtcaagctnnnnnnngaataatcaaaatttgtataaatccattctaaattataa |
200 |
Q |
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| T |
4144087 |
cttacttcctgaatacatttgtcaattgttaacaagaatatatattgtcaagctaaaaaaagaataatcaaaatttgtataaatccattctaaattacaa |
4144186 |
T |
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| Q |
201 |
ttatgttctagcatggtttatgcaaga |
227 |
Q |
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| T |
4144187 |
ttatgttctagcatggtttatgcaaga |
4144213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 4121153 - 4121294
Alignment:
| Q |
10 |
tgtttgtggcagcttcaagctttgcgaactcatacactggtagctcatctattttcatttggttttgttctctattaatcaagttttgagacttacttcc |
109 |
Q |
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| T |
4121153 |
tgtttgtagcagtttcaagcttttcaaagtcatacagtggtagctcatccaatttcatttgtttatgttctctactagtcatgtttcgagattgtcttcc |
4121252 |
T |
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| Q |
110 |
tgaatacatttgtcaattgttaacaagaatatatattgtcaa |
151 |
Q |
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| T |
4121253 |
tgaatggatttttcaattgttaagaaggatatatattgtcaa |
4121294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 4151864 - 4151998
Alignment:
| Q |
11 |
gtttgtggcagcttcaagctttgcgaactcatacactggtagctcatctattttcatttggttttgttctctattaatcaagttttgagacttacttcct |
110 |
Q |
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| T |
4151864 |
gtttgtggcagtttcaagcttttcaaaatcatatagtggtagctcatccaatttcatttgttgatgttctctagtaatcatattttgaggtagtcttcct |
4151963 |
T |
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| Q |
111 |
gaatacatttgtcaattgttaacaagaatatatatt |
146 |
Q |
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| T |
4151964 |
ggattcatttgtcagttgttagcaa-aatatatatt |
4151998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 4131414 - 4131556
Alignment:
| Q |
10 |
tgtttgtggcagcttcaagctttgcgaactcatacactggtagctcatctattttcatttggttttgttctctattaatcaagttttgagacttacttcc |
109 |
Q |
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| T |
4131414 |
tgtttgtggcagtttcaagcttttcaaaatcatatagtggtagctcatccaatttcatttgtttacattctctagtagtcaagtttcgagattgtcttcc |
4131513 |
T |
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| Q |
110 |
tg-aatacatttgtcaattgttaacaagaatatatattgtcaa |
151 |
Q |
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| T |
4131514 |
tgaaatgaatttttcaagtgttaagaagggtatatattgtcaa |
4131556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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