View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17421_low_5 (Length: 586)
Name: NF17421_low_5
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 4 - 570
Target Start/End: Complemental strand, 29730142 - 29729578
Alignment:
| Q |
4 |
ttgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctgccatcttcttga |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29730142 |
ttgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctgccatcatcttga |
29730043 |
T |
|
| Q |
104 |
atctattgatctgcaaagtcccacatctcttgttggcaagtgtaatgaagcattggcaattgcaaaaacaatatctggtttacgccattttaaattgaat |
203 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29730042 |
atcttttgatctgcaaagtcccacatctcttgttggcaagtgtaatgaagcattagcaattgcaaaaacaatatctggtttacgccatcttaaattgaat |
29729943 |
T |
|
| Q |
204 |
ggaattaatttctcttaactatgttggattgcttgctattcttgaccgctgccctcttcttgaatctcttgaactgcaaagttccaggtattattattcc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29729942 |
ggaattaatttctcttaactatgttggattgcttgctattcttgaccgctgccctcttcttgaatctcttgatctgcaaagttccaggtattattattcc |
29729843 |
T |
|
| Q |
304 |
aaatccaatccaattgtttacttaaagggtgctgcgagcaaattaaagaattccgacctccaattctctatgattttgctttagctaaaaggacattttt |
403 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| |||||||||||| |
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| T |
29729842 |
aaatccaatccaa--gtttacttaaatggtgctgcgagcaaattaaagatttccgacctccaattctctatgattctgatttagctataaggacattttt |
29729745 |
T |
|
| Q |
404 |
gttaagatatatatgctaattattattggcagtattagataaatattgattatgattatgattgatgtcttggcatgatttcttcccaaatgttgatgat |
503 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29729744 |
gttaagatatatatgctaattatgattggcagtattagataaatattgattatgattatgattgatgtcttggcatgatttcttctcaaatgttgatgat |
29729645 |
T |
|
| Q |
504 |
gttgctttgaagtaattgtgttgcctgcatctgaaagtgtatttgaatttctcaagaacctagtatg |
570 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29729644 |
gttgctttgaagtatttgtgttgcctgcatctgaaagtgtatttgaatttctcaagaacctagtatg |
29729578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 29713328 - 29713433
Alignment:
| Q |
2 |
tattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctgccatcttctt |
101 |
Q |
| |
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|||||| ||||||||| |||||||| ||||||||||| |||||||| ||| | ||||| || |||||| ||||||||||||| ||||||| ||||||| |
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| T |
29713328 |
tattgcaaaaacaatgtctgggttatgccatcttaaattgaatggattttttagtaactgtggtggattggttgctattcttgatggctgccctcttctt |
29713427 |
T |
|
| Q |
102 |
gaatct |
107 |
Q |
| |
|
|||||| |
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|
| T |
29713428 |
gaatct |
29713433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 273
Target Start/End: Original strand, 29713329 - 29713436
Alignment:
| Q |
162 |
attgcaaaaacaatatctggtttacgccattttaaattgaatggaattaatttctcttaactatgttggattgcttgctattcttgaccgctgccctctt |
261 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||| |||||||||||||| || | | ||||| || ||||||| ||||||||||||| ||||||||||| |
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| T |
29713329 |
attgcaaaaacaatgtctgggttatgccatcttaaattgaatggattt----tttagtaactgtggtggattggttgctattcttgatggctgccctctt |
29713424 |
T |
|
| Q |
262 |
cttgaatctctt |
273 |
Q |
| |
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|||||||||||| |
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|
| T |
29713425 |
cttgaatctctt |
29713436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 29752629 - 29752744
Alignment:
| Q |
2 |
tattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctgccatcttctt |
101 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||| || |||| | | ||||||||| || ||| ||||||||||||||||| |||| ||||| |
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| T |
29752629 |
tattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattatggcttaactatgatgaattgcttgctattcttgacggttgcccgcttctc |
29752728 |
T |
|
| Q |
102 |
gaatctattgatctgc |
117 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
29752729 |
gaatctcttgatctgc |
29752744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 29752681 - 29752744
Alignment:
| Q |
217 |
cttaactatgttggattgcttgctattcttgaccgctgccctcttcttgaatctcttgaactgc |
280 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| | ||||| ||||| ||||||||||| |||| |
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| T |
29752681 |
cttaactatgatgaattgcttgctattcttgacggttgcccgcttctcgaatctcttgatctgc |
29752744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 30621545 - 30621499
Alignment:
| Q |
226 |
gttggattgcttgctattcttgaccgctgccctcttcttgaatctct |
272 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
30621545 |
gttgggttgcttgctattcttgatggatgccctcttcttgaatctct |
30621499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 41100278 - 41100173
Alignment:
| Q |
2 |
tattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctgccatcttctt |
101 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||||| || |||||||| ||| ||| |||| | |||| |||||| ||||||| ||||||| ||||||| |
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| T |
41100278 |
tattgcaaaaataatgtctgggttacgccatcttgaattgaatggatttttgcgtaattatggtagattgcttgctcttcttgatggctgccctcttctt |
41100179 |
T |
|
| Q |
102 |
gaatct |
107 |
Q |
| |
|
|||||| |
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|
| T |
41100178 |
gaatct |
41100173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 41100277 - 41100170
Alignment:
| Q |
162 |
attgcaaaaacaatatctggtttacgccattttaaattgaatggaattaatttctcttaactatgttggattgcttgctattcttgaccgctgccctctt |
261 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||| || ||||||||||| || | | ||| |||| | ||||||||||| ||||||| ||||||||||| |
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|
| T |
41100277 |
attgcaaaaataatgtctgggttacgccatcttgaattgaatggattt----ttgcgtaattatggtagattgcttgctcttcttgatggctgccctctt |
41100182 |
T |
|
| Q |
262 |
cttgaatctctt |
273 |
Q |
| |
|
|||||||||||| |
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|
| T |
41100181 |
cttgaatctctt |
41100170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 525
Target Start/End: Complemental strand, 41099942 - 41099888
Alignment:
| Q |
471 |
tcttggcatgatttcttcccaaatgttgatgatgttgctttgaagtaattgtgtt |
525 |
Q |
| |
|
|||||||||| |||| || ||||||||||| |||||||||| |||||||| |||| |
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|
| T |
41099942 |
tcttggcatgctttcatctcaaatgttgattatgttgctttaaagtaattttgtt |
41099888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 27718359 - 27718396
Alignment:
| Q |
238 |
gctattcttgaccgctgccctcttcttgaatctcttga |
275 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
27718359 |
gctattcttgaccgatgccctcttctcgaatctcttga |
27718396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 38285719 - 38285760
Alignment:
| Q |
232 |
ttgcttgctattcttgaccgctgccctcttcttgaatctctt |
273 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
38285719 |
ttgcttgctattcttgatggatgccctcttcttgaatctctt |
38285760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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