View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17421_low_6 (Length: 548)
Name: NF17421_low_6
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 10 - 534
Target Start/End: Complemental strand, 3111258 - 3110736
Alignment:
| Q |
10 |
catcatcatctgataagtcaattattattgcttccttgatactgcttccactgctacttccaccaacaacatcctcccctggcaatttctccacatactc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3111258 |
catcatcatctgataagtcaattattattgcttccttgatactgcttccactactactaccaccaacaacatcctcccctggcaatttctccacatactc |
3111159 |
T |
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| Q |
110 |
cttggaatcaattagatcgaattgttcttcggaagatggatacttcctcttttgaccagtctgctcttcataaaacttttgctccaccatatcttgccac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3111158 |
cttggaatcaattagatcgaattgttcttcggaagatggatacttcctcttttgaccagtctgctcctcataaaacttttgctccaccatatcttgccac |
3111059 |
T |
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| Q |
210 |
tgttctgcttgaaataaccannnnnnnnnnctcaaacacgagattcaaagtgaaagacacgtatggggcaagccaacagagtgttaaacaaaaagattat |
309 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3111058 |
tgttctgcttgaaataaccatttttttt--ctcaaacacgagattcaaagtgaaagacacgtatggggcaagccaacagagtgttaaacaaaaagattat |
3110961 |
T |
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| Q |
310 |
caaaatccaacccattcaatcaaattattaacattagaaaatcaaaacgaagacaacaacctcggcaatataaactgaaacccgtgttgtcaaatagcag |
409 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110960 |
caaaatccaacccattcaatcaaattcttaacattagaaaatcaaaacgaagacaacaacctcggcaatataaactgaaacccgtgttgtcaaatagcag |
3110861 |
T |
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| Q |
410 |
tgtgctatagcagtatagcaaagcagatttttaggggaaaaaccgggctataaaaactgtgacgctatcctagtttttcttttagggcaatagcggccac |
509 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3110860 |
tgtgctatagcggtatagcatagcagatttttaggggaaaaaccgggctataaaaactgtgacgctatcctagtttttcttttagggcaacagcggccac |
3110761 |
T |
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| Q |
510 |
tattccagtttctggtagcagatat |
534 |
Q |
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| T |
3110760 |
tattccagtttctggtagcagatat |
3110736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 3184932 - 3185005
Alignment:
| Q |
456 |
gctataaaaactgtgacgctatcctagtttttcttttagggcaatagcggccactattccagtttctggtagca |
529 |
Q |
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||||||||||| |||| ||| ||||| ||||||| ||||||||||||| |||||| |||||||||||| ||||| |
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| T |
3184932 |
gctataaaaaccgtgatgctgtcctaatttttctattagggcaatagctgccacttttccagtttctgctagca |
3185005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 532
Target Start/End: Original strand, 7277853 - 7277929
Alignment:
| Q |
456 |
gctataaaaactgtgacgctatcctagtttttcttttagggcaatagcggccactattccagtttctggtagcagat |
532 |
Q |
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| T |
7277853 |
gctatgaaaactgtgatgctatcctagtttctctaataaggcaatagtggctgctatttcagtttccgctagcagat |
7277929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 491 - 532
Target Start/End: Original strand, 37451267 - 37451308
Alignment:
| Q |
491 |
ttagggcaatagcggccactattccagtttctggtagcagat |
532 |
Q |
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| T |
37451267 |
ttagggcaatagcagccactattccagtttctggtagaagat |
37451308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 532
Target Start/End: Original strand, 34558768 - 34558827
Alignment:
| Q |
473 |
gctatcctagtttttcttttagggcaatagcggccactattccagtttctggtagcagat |
532 |
Q |
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| T |
34558768 |
gctatcctagtttcgctattagagaaatagcggccactattctagtttctgctagcagat |
34558827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 29072139 - 29072082
Alignment:
| Q |
471 |
acgctatcctagtttttcttttagggcaatagcggccactattccagtttctggtagc |
528 |
Q |
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|||||||||||||||| || || ||||| ||| ||| |||||||||||||||| |||| |
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| T |
29072139 |
acgctatcctagttttactatttgggcactagtggctactattccagtttctgctagc |
29072082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 522
Target Start/End: Complemental strand, 24839075 - 24839015
Alignment:
| Q |
462 |
aaaactgtgacgctatcctagtttttcttttagggcaatagcggccactattccagtttct |
522 |
Q |
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||||||| || ||||||||||||| || |||||||||||| ||| |||||||||||||| |
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| T |
24839075 |
aaaactgcgatgctatcctagtttccctattagggcaatagtagccgctattccagtttct |
24839015 |
T |
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