View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17421_low_7 (Length: 503)
Name: NF17421_low_7
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 38555614 - 38556060
Alignment:
| Q |
18 |
actatgactattatccgaacaatgtgtcctacagtgagtaatccttactcggctatctttgcgggtaatttttgaatattccttgctcttgggattgtga |
117 |
Q |
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| T |
38555614 |
actatggctattatccgaacaa---gtcctacagtgagtagtccttacccggctatctttgcgggtaatttgtgaatattccttgctcttgggattgtga |
38555710 |
T |
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| Q |
118 |
tgccccatgttcgactcccattttctccttcatgacatgatccattgaccacatccttagtgcacgattccatgataattatgtctctttcatcatccct |
217 |
Q |
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| T |
38555711 |
taccccatgttcgactcccattttctccttcacgacatgattcattgacaacatccttggtgcacgattccatgataatcatgtctctttcctcatccct |
38555810 |
T |
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| Q |
218 |
cttgatggttagtggtgctacaaacatggaacataagttttgtgcaccattgtccagtctccactatattttgactcagtatgaggtctccacgaccaac |
317 |
Q |
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| T |
38555811 |
cttgatggttagtggtgctacaaacatggaacatgagttttgtgcatcattgtccaatctccactatattttgactcagtatgaggtctccacgaccaac |
38555910 |
T |
|
| Q |
318 |
gtactgcgttagtggtattgacaaagaatcaactcccctctcttagctattatagtctcgcctataacttttgattgcataagaagtcttatcacctaaa |
417 |
Q |
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| T |
38555911 |
gtactgcgttagtggcattgacaaagaatcaactcccctctcttagctattatagtctcgcctataactttcgatcgcataagaagtcttatcacctcaa |
38556010 |
T |
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| Q |
418 |
agtacactcgtctatctaccaaggtcaacttacaaaataattatttttag |
467 |
Q |
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| T |
38556011 |
agtacactcatctatctaccaaggtcaacttacaaaataattatttttag |
38556060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 495
Target Start/End: Original strand, 38556118 - 38556150
Alignment:
| Q |
463 |
tttagttgctctttgtccaatatatatgatgat |
495 |
Q |
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| T |
38556118 |
tttagttgctctttgtccaatatatatgatgat |
38556150 |
T |
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