View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17421_low_8 (Length: 445)
Name: NF17421_low_8
Description: NF17421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17421_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Original strand, 9077687 - 9078105
Alignment:
| Q |
19 |
caacttctgtttcactttttattcttttggattactatatataatgaaagtactcactcttctatacagtgaaattagatttggctcgtcgaacggcaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9077687 |
caacttctgtttcactttttattcttttggattactatatataatgaaagtactcactcttctatacagtgaaattagatttggctcgtcgaacggcaag |
9077786 |
T |
|
| Q |
119 |
tacccggccataagtacaaagagaatgactccacatgaccaaatatcagatgaagaaccaacataacctctatcattaagcacctgatacaaaaggacac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9077787 |
tacccggccataagtacaaagagaatgactccacatgaccaaatatcagatgaagaaccaacataacctctatcattaagcacctgatacaaaaggaaac |
9077886 |
T |
|
| Q |
219 |
accaattaacatttactttagtttgagaaaacaaaatgagtctttcatttgatccacaaagaaatagtactacctcaggagcaacgtaattcggtgttcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9077887 |
accaattaacatttactttagtttgagaaaacaaaatgagtctttcatttgatccacaaagaaaaagtactacctcaggagcaacgtaattcggtgttcc |
9077986 |
T |
|
| Q |
319 |
acatgccgtgcggagaagttcatcctcctgtaataaatatatatgaatttaacaaagatgtgtcctaactcctaaggttattcaaatgcaacaatcatct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
9077987 |
acatgccgtgcggagaagttcatcctcctgtaataaatatatatgaatttaacaaagatgtgtcctaactcctaaggttattcaaatgtaacactcatct |
9078086 |
T |
|
| Q |
419 |
actaggttaaagtataatc |
437 |
Q |
| |
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||||||||||||||||||| |
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| T |
9078087 |
actaggttaaagtataatc |
9078105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 437
Target Start/End: Original strand, 9086457 - 9086882
Alignment:
| Q |
19 |
caacttctgtttcactttttattcttttggattactatatata--------------atgaaagtactcactcttctatacagtgaaattagatttggct |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||||||| |
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| T |
9086457 |
caacttctgtttcactttttattcttttggattactatatatatatatatatatattatgaaatcactcacttttctatacagtgcaattagatttggct |
9086556 |
T |
|
| Q |
105 |
cgtcgaacggcaagtacccggccataagtacaaagagaatgactccacatgaccaaatatcagatgaagaaccaacataacctctatcattaagcacctg |
204 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9086557 |
catcgaacggcaagtacccggccataagtacaaagagaatgactccacatgaccaaatatcagatgaagaaccaacataacctctatcattaagcacctg |
9086656 |
T |
|
| Q |
205 |
atacaaaaggacacaccaattaacatttactttagtttgagaaaacaaaatgagtctttcatttgatccacaaagaaatagtactacctcaggagcaacg |
304 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9086657 |
atacaaatggatacaccaattaacatttactttagtttgagaaaacaaaatgagtctttcatttgatccacaaagaaaaagtactacctcaggagcaacg |
9086756 |
T |
|
| Q |
305 |
taattcggtgttccacatgccgtgcggagaagttcatcctcctgtaataaatatatatgaatttaacaaagatgtgtcctaactcctaaggttattcaaa |
404 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| || | |||||||||||| |||| |
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| T |
9086757 |
taattcggtgttccacatgccgtgcggagaagttcatcctcctataataagtatatatgaatttaacaaaggtg-------agtcctaaggttatgcaaa |
9086849 |
T |
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| Q |
405 |
tgcaacaatcatctactaggttaaagtataatc |
437 |
Q |
| |
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|| |||| ||||||||| ||||||||||||||| |
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| T |
9086850 |
tgtaacactcatctactcggttaaagtataatc |
9086882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 6417661 - 6418031
Alignment:
| Q |
19 |
caacttctgtttcactttttattcttttggattactatatata--------------atgaaagtactcactcttctatacagtgaaattagatttggct |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||||||| |
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| T |
6417661 |
caacttctgtttcactttttattcttttggattactatatatatatatatatatattatgaaatcactcacttttctatacagtgcaattagatttggct |
6417760 |
T |
|
| Q |
105 |
cgtcgaacggcaagtacccggccataagtacaaagagaatgactccacatgaccaaatatcagatgaagaaccaacataacctctatcattaagcacctg |
204 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6417761 |
catcgaacggcaagtacccggccataagtacaaagagaatgactccacatgaccaaatatcagatgaagaaccaacataacctctatcattaagcacctg |
6417860 |
T |
|
| Q |
205 |
atacaaaaggacacaccaattaacatttactttagtttgagaaaacaaaatgagtctttcatttgatccacaaagaaatagtactacctcaggagcaacg |
304 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6417861 |
atacaaatggatacaccaattaacatttactttagtttgagaaaacaaaatgagtctttcatttgatccacaaagaaaaagtactacctcaggagcaacg |
6417960 |
T |
|
| Q |
305 |
taattcggtgttccacatgccgtgcggagaagttcatcctcctgtaataaatatatatgaatttaacaaag |
375 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
6417961 |
taattcggtgttccacatgccgtgcggagaagttcatcctcctataataagtatatatgaatttaacaaag |
6418031 |
T |
|
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